DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and AT4G27680

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_194498.1 Gene:AT4G27680 / 828882 AraportID:AT4G27680 Length:398 Species:Arabidopsis thaliana


Alignment Length:344 Identity:113/344 - (32%)
Similarity:171/344 - (49%) Gaps:69/344 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 DP----EKKKLQSKLEDAIVIEKPKVQ---------------------WSDVAGLDAAKEALKEA 147
            ||    .||.|:.|.|.:..:.:|.||                     :..:.||:..|:||.|.
plant    35 DPNREASKKALEHKKEISKRLGRPLVQTNPYEDVIACDVINPDHIDVEFGSIGGLETIKQALYEL 99

  Fly   148 VILPIKFPQLFT-GKRI-PWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGES 210
            ||||:|.|:||. ||.: |.||:||:|||||||:.||||:|.|:. :.|.:|..|:|||||.|::
plant   100 VILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-AVFINVRVSNLMSKWFGDA 163

  Fly   211 EKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQMQGVGNDTDG-ILVLG 274
            :|||..:|.||.:.:|:||||||::|....|...:::::..:||||:....|...|... ::||.
plant   164 QKLVSAVFSLAYKLQPAIIFIDEVESFLGQRRSTDHEAMANMKTEFMALWDGFSTDPHARVMVLA 228

  Fly   275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADI 339
            |||.|..||.||.||..:...|.:|:...|..:.|:.| ....|..:.|...:|...|||:|:||
plant   229 ATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKVTL-KGERVEPDIDFDHIARLCEGYTGSDI 292

  Fly   340 SIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFE 404
            ..:.:.|...|:|::..|....:                  ||                    .:
plant   293 FELCKKAAYFPIREILDAERKGK------------------PC--------------------LD 319

  Fly   405 P-PVTMRDMLKSLSRTKPT 422
            | |::..|:.|.|:.:|.|
plant   320 PRPLSQLDLEKVLATSKKT 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 79/193 (41%)
AAA_lid_3 323..361 CDD:465537 12/37 (32%)
Vps4_C 379..439 CDD:462762 9/45 (20%)
AT4G27680NP_194498.1 RecA-like_ATAD1 85..250 CDD:410928 76/165 (46%)
AAA_lid_3 274..310 CDD:465537 11/35 (31%)
Blue background indicates that the domain is not in the aligned region.

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