Protein Alignment Vps4 and SKD1

DIOPT Version :9

• Sequence 1: NP_001285396.1
• Gene: Vps4 / 32777
• FlyBaseID: FBgn0283469
• Length: 442
• Species: Drosophila melanogaster
• Sequence 2: NP_180328.1
• Gene: SKD1 / 817306
• AraportID: AT2G27600
• Length: 435
• Species: Arabidopsis thaliana
• Alignment Length: 442
• Identity: 236/442 - (53%)
• Similarity: 312/442 - (70%)
• Gaps: 20/442 - (4%)

  Fly     8 QKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQGEKAKDSIRAKCLQYLDRAEKLK 72
            ::||:.|.:|..||...||.:|..||.:.:|||...:||| :..|.:::|..|..:||.|||:::
plant     7 EQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYE-KNPKIREAITQKFTEYLRRAEEIR 70

  Fly    73 EYLKKGKKKPIKEGGESSAKDDKDKKSDSD--DEDGDDPEKKKLQSKLEDAIVIEKPKVQWSDVA 135
            ..|.:|...|...|..:.|...|.|..|.:  .:||:|||:.||::.|..|||.|||.::|||||
plant    71 AVLDEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLNSAIVREKPNIKWSDVA 135

  Fly   136 GLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSS 200
            ||::||:||:||||||:||||.|||||.||:..||:||||||||||||||||||: |||||||||
plant   136 GLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAD-STFFSVSSS 199

  Fly   201 DLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSD-NENDSVRRIKTEFLVQMQGVG 264
            ||:|||:|||||||.||||:||:..|||||:|||||:|..|.: ||:::.||||||.||||||||
plant   200 DLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVG 264

  Fly   265 NDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKELAG 329
            ::.:.:|||.|||.|:.||.||||||:||||||||||.||..|||:|||:|.|.|||.|.:.|..
plant   265 HNDEKVLVLAATNTPYALDQAIRRRFDKRIYIPLPEAKARQHMFKVHLGDTPHNLTEPDFEYLGQ 329

  Fly   330 KTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNW 394
            ||||:||:|:|:.|:|.|.|||||.|.|..|.:    ||       :...:||.|...||::...
plant   330 KTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFK----SP-------DGTWMPCGPRHPGAIQTTM 383

  Fly   395 MDVP----SDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG 442
            .|:.    ::|:..||:|..|..|.|:|.:|||::.||....:||::||:||
plant   384 QDLATKGLAEKIIPPPITRTDFEKVLARQRPTVSKSDLDVHERFTQEFGEEG 435

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Vps4	NP_001285396.1	MIT_VPS4	6..69	CDD:239141	23/60 (38%)
		RecA-like_VPS4	126..296	CDD:410929	123/170 (72%)
		AAA_lid_3	323..361	CDD:407720	20/37 (54%)
		Vps4_C	379..439	CDD:401324	21/63 (33%)
SKD1	NP_180328.1	MIT_VPS4	4..78	CDD:239141	27/71 (38%)
		RecA-like_VPS4	126..296	CDD:410929	123/170 (72%)
		AAA_lid_3	323..358	CDD:407720	19/34 (56%)
		Vps4_C	368..432	CDD:401324	21/63 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	192	1.000	Domainoid score	I935
eggNOG	1	0.900	-	-		E1_KOG0739
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	446	1.000	Inparanoid score	I397
OMA	1	1.010	-	-		QHG53561
OrthoDB	1	1.010	-	-		D787710at2759
OrthoFinder	1	1.000	-	-		FOG0002106
OrthoInspector	1	1.000	-	-		oto3431
orthoMCL	1	0.900	-	-		OOG6_100670
Panther	1	1.100	-	-	O	PTHR23074
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1557
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	13	12.840