DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and vps4a

DIOPT Version :9

Sequence 1:NP_001285396.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_001070077.1 Gene:vps4a / 767670 ZFINID:ZDB-GENE-060929-388 Length:440 Species:Danio rerio


Alignment Length:408 Identity:311/408 - (76%)
Similarity:350/408 - (85%) Gaps:11/408 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TTLQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQGEKAKDSIRAKCLQYLDRAE 69
            :||||||:|||||||||:.|||.||||||:|.||||||.|||||..:|||:|||.||:|||||||
Zfish     4 STLQKAIELVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRGKCMQYLDRAE 68

  Fly    70 KLKEYLK---KGKKKPIKEGGESSAKDDKDKKSDSDDEDGDDPEKKKLQSKLEDAIVIEKPKVQW 131
            |||:|||   |..|||:||       ...:.|||||.| |::|||||||..|..|||:|||.|:|
Zfish    69 KLKDYLKNKDKQGKKPVKE-------TQSNDKSDSDSE-GENPEKKKLQEHLMGAIVMEKPNVRW 125

  Fly   132 SDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFS 196
            ||||||:.||||||||||||||||.||||||.||:||||||||||||||||||||||||.|||||
Zfish   126 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 190

  Fly   197 VSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQMQ 261
            ||||||||||||||||||||||:||||||||||||||:||:|.:|::||:::.||||||||||||
Zfish   191 VSSSDLMSKWLGESEKLVKNLFDLARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQ 255

  Fly   262 GVGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKE 326
            ||||:.||||||||||||||||:||||||||||||||||..||..||::|||||.|.|||.||::
Zfish   256 GVGNNNDGILVLGATNIPWVLDAAIRRRFEKRIYIPLPEEPARSAMFRLHLGNTPHSLTEADLRQ 320

  Fly   327 LAGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVE 391
            ||.||:|||||||||:||||||:||||||:|||||:|.|||.:|...||:|||.||||||..|:|
Zfish   321 LARKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRSNSAVIVDDLLTPCSPGDPEAIE 385

  Fly   392 MNWMDVPSDKLFEPPVTM 409
            |.|||||.|||.||.|.|
Zfish   386 MTWMDVPGDKLLEPIVCM 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_001285396.1 MIT_VPS4 6..69 CDD:239141 49/62 (79%)
RecA-like_VPS4 126..296 CDD:410929 147/169 (87%)
AAA_lid_3 323..361 CDD:407720 30/37 (81%)
Vps4_C 379..439 CDD:401324 22/31 (71%)
vps4aNP_001070077.1 MIT_VPS4 4..79 CDD:239141 57/74 (77%)
P-loop_NTPase 125..>181 CDD:304359 50/55 (91%)
AAA 158..294 CDD:214640 119/135 (88%)
AAA 162..292 CDD:278434 114/129 (88%)
Vps4_C 373..>403 CDD:286426 21/29 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 239 1.000 Domainoid score I2228
eggNOG 1 0.900 - - E1_KOG0739
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H69132
Inparanoid 1 1.050 645 1.000 Inparanoid score I790
OMA 1 1.010 - - QHG53561
OrthoDB 1 1.010 - - D321685at33208
OrthoFinder 1 1.000 - - FOG0002106
OrthoInspector 1 1.000 - - otm24540
orthoMCL 1 0.900 - - OOG6_100670
Panther 1 1.100 - - LDO PTHR23074
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1557
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.840

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