DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vps4 and fignl2

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_001201837.1 Gene:fignl2 / 561837 ZFINID:ZDB-GENE-090313-189 Length:684 Species:Danio rerio


Alignment Length:391 Identity:92/391 - (23%)
Similarity:162/391 - (41%) Gaps:85/391 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GEKAKDSIRAKCLQY-LDRAEKLKEYLKKGKKKPIKEGGES----SAKDDKDKKSDSDDEDGDDP 109
            |.:...|::.|..:. ||..:......:|....|:|.||:|    :.|......:.|.|..|..|
Zfish   276 GSEPGGSLKRKAFEMTLDEEDSDSSRYRKYSYDPMKTGGDSPYGVTDKAGNGFGTGSTDPQGFKP 340

  Fly   110 EKKKLQSKLEDAIV--------------------------------------------------- 123
            .|...||.||...|                                                   
Zfish   341 SKPSSQSSLEGDEVGKYSGLKPLVSPTYGAAGDYSPPAAMTGENGGAEQGFSQNRSQKRSDPMKS 405

  Fly   124 IE--------------KPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPP 174
            ||              .|.:.|:::||....|.||:|.::.|:..|.....   |.|.||||||.
Zfish   406 IEPRMLELVSRELQDCSPAMLWTELAGNCHIKAALEEDLLWPVLRPNPAIH---PPKTILLFGPQ 467

  Fly   175 GTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCS 239
            |.||:.||::::::...| |:.:|.:.|.||..||:|:|:..||.:|...:|:::.:.|::::  
Zfish   468 GGGKTTLARSLSSQIGAS-FYRLSCATLASKLKGEAEQLLLTLFSVATARQPAMVLLSEVEAI-- 529

  Fly   240 ARSDNENDSVRRIKTEFLVQMQGV-GNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 303
                 |.:.:|:   :...|::.: .|.::..||:..|..|.::..::.|.|.||.:|.||:.:.
Zfish   530 -----EEEGLRQ---QLQAQLEKIQHNQSNQFLVVCTTRRPDLIKDSLLRCFSKRYHIGLPDGNT 586

  Fly   304 RLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSP 368
            |..:....|......|:|::|..:..::||:|..::..:.:.||...........|....|..||
Zfish   587 RRHVLLQALAPQGCSLSERELSAVLQRSEGFSVWELLQLCQQALASASASASVPLHSLPASLSSP 651

  Fly   369 T 369
            |
Zfish   652 T 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141 5/19 (26%)
RecA-like_VPS4 126..296 CDD:410929 50/170 (29%)
AAA_lid_3 323..361 CDD:465537 7/37 (19%)
Vps4_C 379..439 CDD:462762
fignl2NP_001201837.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 27..48
PHA03247 <86..287 CDD:223021 2/10 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 99..179
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 292..403 19/110 (17%)
P-loop containing Nucleoside Triphosphate Hydrolases 429..579 CDD:476819 48/163 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.