DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and fign

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:XP_021334341.1 Gene:fign / 553599 ZFINID:ZDB-GENE-050522-339 Length:747 Species:Danio rerio


Alignment Length:376 Identity:111/376 - (29%)
Similarity:193/376 - (51%) Gaps:64/376 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 GESSAKDDKDKKSDSDDE-------------DGDDPEKKKLQSKLEDAIVIE---------KPKV 129
            |||..|......||..|:             ....|.:::|  |..||.::|         .|.|
Zfish   410 GESFGKFGSPVMSDHGDDSRQHLPHSIGTATSSSHPAEEQL--KNSDASLVEMVTTEILQQTPPV 472

  Fly   130 QWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTF 194
            .|||:|||:.||..:|:.|:.||..|.:|:|.....:.||||||.|||::.|.:.:|::.. :.|
Zfish   473 DWSDIAGLEMAKATIKDEVLWPILRPDMFSGLATLPRSILLFGPQGTGRTLLGRCMASQLG-AAF 536

  Fly   195 FSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQ 259
            ..:|.|.|::|||||.||:|:..|.:||..:||::||.::|.:.|::. :|...|.|||:|.|:|
Zfish   537 LLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLLLSSQL-SEESPVNRIKSELLLQ 600

  Fly   260 MQGV-GNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQD 323
            :.|| .:..:.:||:.:|:.|..:|.::||.|.||:.:|||:|.||..:....|....:.|::::
Zfish   601 LDGVLSSPEEHVLVVCSTSKPEEIDESLRRYFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKE 665

  Fly   324 LKELAGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQG 388
            :..|..:|:|:||.|:..:.::||:.|:..:..|.    :||..|                   |
Zfish   666 VTLLVQRTDGFSGLDVVRLCQEALVGPLHGMPGAD----LSGMIP-------------------G 707

  Fly   389 AVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFG 439
            .:.              ||:.:|......:.:|::::.:|....::.:.||
Zfish   708 QMR--------------PVSYQDFENVFCKIQPSISQKELDTYTEWNKMFG 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 69/170 (41%)
AAA_lid_3 323..361 CDD:465537 10/37 (27%)
Vps4_C 379..439 CDD:462762 6/59 (10%)
fignXP_021334341.1 PHA03378 <174..300 CDD:223065
RecA-like_fidgetin 476..638 CDD:410931 65/163 (40%)
AAA_lid_3 669..>694 CDD:465537 9/24 (38%)
Vps4_C <711..744 CDD:462762 5/32 (16%)
Blue background indicates that the domain is not in the aligned region.

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