DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and Fign

DIOPT Version :9

Sequence 1:NP_001285396.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_001259995.1 Gene:Fign / 33544 FlyBaseID:FBgn0031519 Length:523 Species:Drosophila melanogaster


Alignment Length:404 Identity:145/404 - (35%)
Similarity:221/404 - (54%) Gaps:53/404 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 AQGEKAKDSIRAKCLQYLDRAEKLKEYLKKGKKKPIKEGGESSAKDD------KDKKSDSDDEDG 106
            |:.:...|.::.|..|.....:.:...:...:||.:  ||:.:...:      ::..|.|.....
  Fly   158 AREQLIMDELKKKNRQATSEVDAVPTGMMNFRKKTL--GGKRTVSSNFVSPVAQNDNSTSSRSSS 220

  Fly   107 DDPEKKKLQSKLEDAIVIE-----KPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWK 166
            ..|....|.||:.|.|:.|     || |.|.|:|||::||....||:|:|::.|.||||.|.|.:
  Fly   221 IPPALAHLDSKMVDHILGESMHDFKP-VAWEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRCPPR 284

  Fly   167 GILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFI 231
            |:||||||||||:.:||::|::| ::.|||::.|.|.|||:|::|||||.||.:|..|:|:||||
  Fly   285 GVLLFGPPGTGKTLIAKSIASQA-KAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFI 348

  Fly   232 DEIDSMCSARSDNENDSVRRIKTEFLVQMQG-VGNDTDGILVLGATNIPWVLDSAIRRRFEKRIY 295
            ||:||:.|.||.|||:|..|:|.|||:.:.| ..|:...:||:||||.|..||.|:||||.:|:|
  Fly   349 DEVDSLLSKRSANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLY 413

  Fly   296 IPLPEAHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEPVRKVQTATHF 360
            :|||...||..:.:..:....|.|..:.:.|||..|:||||||:..:.|.|.|.|:|.:      
  Fly   414 VPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSL------ 472

  Fly   361 KRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNE 425
                                  :|.....:|.:.:         |.|||.|..::|.....:|:.
  Fly   473 ----------------------TPDQMEVIETHQL---------PAVTMDDFKQALRVISKSVSS 506

  Fly   426 DDLKKLRKFTEDFG 439
            :|.|:...:.|.:|
  Fly   507 EDCKQFEAWNEIYG 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_001285396.1 MIT_VPS4 6..69 CDD:239141 4/20 (20%)
RecA-like_VPS4 126..296 CDD:410929 92/170 (54%)
AAA_lid_3 323..361 CDD:407720 15/37 (41%)
Vps4_C 379..439 CDD:401324 12/59 (20%)
FignNP_001259995.1 AAA 282..418 CDD:214640 75/136 (55%)
AAA 286..416 CDD:278434 71/130 (55%)
Vps4_C <480..520 CDD:286426 11/48 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467074
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D59575at33392
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23074
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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