DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and Katnal1

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_001006957.1 Gene:Katnal1 / 288449 RGDID:1359252 Length:488 Species:Rattus norvegicus


Alignment Length:399 Identity:169/399 - (42%)
Similarity:231/399 - (57%) Gaps:66/399 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RAKCLQYLDR-AEKLKEYLKKGKKKPIKEGGESSAKDDKDKKSDSDD-EDGDDPE------KKKL 114
            ||..:...|: |.:.|:|..:|             :|||.:|:..|. .||:.|:      .|.|
  Rat   137 RAHQISKSDKAASRDKDYRARG-------------RDDKARKNMQDGASDGEIPKFDGAGYDKDL 188

  Fly   115 QSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPPGTGKS 179
            ...||..||...|.:.|.|:|.|:.||:.|:|||:||:..|..|.|.|.||||:|:.|||||||:
  Rat   189 VEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGIRRPWKGVLMVGPPGTGKT 253

  Fly   180 YLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSAR-SD 243
            .||||||||.. :|||:||||.|.||:.|||||||:.|||:||.:.|:.||||||||:||.| :.
  Rat   254 MLAKAVATECG-TTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTS 317

  Fly   244 NENDSVRRIKTEFLVQMQGVG----NDTDG--ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 302
            :|:::.||:|:|.|:||.|||    ||...  ::||.|||.||.:|.|:|||.|||||||||.|.
  Rat   318 DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAK 382

  Fly   303 ARLVMFKIHLGNTTHVLTEQD--LKELAGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSG 365
            .|..:.||.|   ..|..:.|  |:::|.||||||||||:.:.|||.:..:|        :|::|
  Rat   383 GRAELLKISL---REVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMR--------RRING 436

  Fly   366 PSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKK 430
            .||   |||                     ...|.:..:.|||..|:..:|.:...:|:..||:|
  Rat   437 LSP---EEI---------------------RALSKEELQMPVTRGDLELALKKIAKSVSAADLEK 477

  Fly   431 LRKFTEDFG 439
            ..|:..:||
  Rat   478 YEKWMVEFG 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141 3/11 (27%)
RecA-like_VPS4 126..296 CDD:410929 100/176 (57%)
AAA_lid_3 323..361 CDD:465537 17/39 (44%)
Vps4_C 379..439 CDD:462762 11/59 (19%)
Katnal1NP_001006957.1 Kp60-NTD 4..72 CDD:439297
SpoVK 52..452 CDD:440232 157/363 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..179 15/54 (28%)
RecA-like_KTNA1 207..376 CDD:410930 98/169 (58%)
Vps4_C <448..486 CDD:462762 10/37 (27%)
Blue background indicates that the domain is not in the aligned region.

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