DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vps4 and vps4

DIOPT Version :9

Sequence 1:NP_001285396.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_593086.1 Gene:vps4 / 2542054 PomBaseID:SPAC2G11.06 Length:432 Species:Schizosaccharomyces pombe


Alignment Length:443 Identity:254/443 - (57%)
Similarity:322/443 - (72%) Gaps:24/443 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQGEKAKDSIRAKCLQYLDRAEKL 71
            |.|||.||..|.:.|..:.|.:|.:.|:..::||:..:||| :.||:|:.||:|.::||||||||
pombe     7 LSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSKVIEYLDRAEKL 70

  Fly    72 KEYLKK-----GKKKPIKEGG-ESSAKDDKDKKSDSDDEDGDDPEKKKLQSKLEDAIVIEKPKVQ 130
            |.||::     ..|..:..|. |.|.....::..|||        .|||:|.|..||::|||.|:
pombe    71 KVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSD--------AKKLRSALTSAILVEKPNVR 127

  Fly   131 WSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFF 195
            |.|:|||:.|||||||.|:||||.||||:..|.||.||||:||||||||||||||||||. ||||
pombe   128 WDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLAKAVATEAG-STFF 191

  Fly   196 SVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQM 260
            |:|||||:|||:||||:||:.|||:||:.||||||||||||:|.:||:.|::|.|||||||||||
pombe   192 SISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQM 256

  Fly   261 QGVGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLK 325
            .|||.|..|:||||||||||.||||||||||||||||||.||||..||::::|.....||.||.|
pombe   257 NGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFK 321

  Fly   326 ELAGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLV-PCSPGDQGA 389
            |||..|:||||:|||||||||:|||||::.||||||.|       ::...|..|| ||||||..|
pombe   322 ELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKEV-------YDNKSNRTLVTPCSPGDPDA 379

  Fly   390 VEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEG 442
            .|.:|::|..:.:.||.:|:||...::.:.|||:|..|::|..:||:|||.||
pombe   380 FESSWLEVNPEDIMEPKLTVRDFYSAVRKVKPTLNAGDIEKHTQFTKDFGAEG 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_001285396.1 MIT_VPS4 6..69 CDD:239141 26/61 (43%)
RecA-like_VPS4 126..296 CDD:410929 129/169 (76%)
AAA_lid_3 323..361 CDD:407720 28/37 (76%)
Vps4_C 379..439 CDD:401324 26/60 (43%)
vps4NP_593086.1 MIT_VPS4 5..79 CDD:239141 33/72 (46%)
PTZ00454 7..387 CDD:240423 235/396 (59%)
P-loop_NTPase 130..>184 CDD:304359 41/53 (77%)
AAA 165..294 CDD:278434 103/129 (80%)
Vps4_C 370..429 CDD:286426 24/58 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 212 1.000 Domainoid score I593
eggNOG 1 0.900 - - E1_KOG0739
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 487 1.000 Inparanoid score I259
OMA 1 1.010 - - QHG53561
OrthoFinder 1 1.000 - - FOG0002106
OrthoInspector 1 1.000 - - oto101074
orthoMCL 1 0.900 - - OOG6_100670
Panther 1 1.100 - - LDO PTHR23074
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1655
SonicParanoid 1 1.000 - - X1557
TreeFam 1 0.960 - -
1312.860

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