DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and spas-1

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_001256115.1 Gene:spas-1 / 179300 WormBaseID:WBGene00016045 Length:512 Species:Caenorhabditis elegans


Alignment Length:331 Identity:131/331 - (39%)
Similarity:185/331 - (55%) Gaps:42/331 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 KKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPPGT 176
            |.:..:|.|. |::...|:..||||..:||.||:||||||...|.||.|.|.|.||||||||||.
 Worm   220 KVIGERLLDE-VLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFKGLRQPVKGILLFGPPGN 283

  Fly   177 GKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSAR 241
            ||:.||||||.| ::..||::|:|.|.|||:|:|||.::.||::||..:|||||||||||:...|
 Worm   284 GKTLLAKAVAGE-SKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCER 347

  Fly   242 SDNENDSVRRIKTEFLVQMQGVGNDTDG-ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR- 304
            |:.:.:..||:|||||||..|..:..|. |||:||||.|..||.|:.|||.|||.:.||:..|| 
 Worm   348 SEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARK 412

  Fly   305 -LVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSP 368
             |:...:...|....|...|::.:|..|.|:|.:|:..:.::|.|.|:|::..       |..|.
 Worm   413 ELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREIDR-------SKLSM 470

  Fly   369 TNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRK 433
            |:.|:|                              ..:...|...:|...:|:.::..:.||..
 Worm   471 TDGEKI------------------------------RKIRASDFDTALRTIRPSTSQKIMSKLSD 505

  Fly   434 FTEDFG 439
            |:..||
 Worm   506 FSRSFG 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 97/170 (57%)
AAA_lid_3 323..361 CDD:465537 10/37 (27%)
Vps4_C 379..439 CDD:462762 6/59 (10%)
spas-1NP_001256115.1 cell_div_CdvC 175..510 CDD:468935 129/328 (39%)
P-loop containing Nucleoside Triphosphate Hydrolases 240..401 CDD:476819 94/161 (58%)
Blue background indicates that the domain is not in the aligned region.

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