DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and figl-1

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_504197.1 Gene:figl-1 / 178829 WormBaseID:WBGene00017981 Length:594 Species:Caenorhabditis elegans


Alignment Length:359 Identity:144/359 - (40%)
Similarity:204/359 - (56%) Gaps:56/359 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 KKSDSDDEDGDDPEK--------------KKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEA 147
            |....|.|.|...||              :.:.|.:|..|:....::.|:|||||:.||:||:|.
 Worm   267 KAMGMDTEGGGKDEKMSGLRAEPTLKHFDENIISLIESEIMSVNNEIGWADVAGLEGAKKALREI 331

  Fly   148 VILPIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEK 212
            |:||.|.|.:|||.|.|.||:||||||||||:.:.:.||::. ::|||::|:|.|.|||:||.||
 Worm   332 VVLPFKRPDVFTGIRAPPKGVLLFGPPGTGKTMIGRCVASQC-KATFFNISASSLTSKWVGEGEK 395

  Fly   213 LVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQMQGVGNDTD-GILVLGAT 276
            ||:.||.:||...||:||||||||:.|:||::|::|.||||||||||:.||....| .:||||||
 Worm   396 LVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESSRRIKTEFLVQLDGVNTAPDERLLVLGAT 460

  Fly   277 NIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISI 341
            |.|..||.|.||||:||:||.|||..:|..:.:..|..|.|.:|..:|:.:...|:||||||:..
 Worm   461 NRPQELDEAARRRFQKRLYIALPEPESRTQIVQNLLVGTRHDITNHNLERIRELTDGYSGADMRQ 525

  Fly   342 VVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPS-DKLFEP 405
            :..:|.|.|:|.:                              ||         |:.: ||....
 Worm   526 LCTEAAMGPIRDI------------------------------GD---------DIETIDKDDIR 551

  Fly   406 PVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFG 439
            .||:.|..::....:|||::..|.....:.:.||
 Worm   552 AVTVMDFAEAARVVRPTVDDSQLDAYAAWDKKFG 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 99/170 (58%)
AAA_lid_3 323..361 CDD:465537 12/37 (32%)
Vps4_C 379..439 CDD:462762 12/60 (20%)
figl-1NP_504197.1 P-loop containing Nucleoside Triphosphate Hydrolases 295..480 CDD:476819 102/185 (55%)
AAA_lid_3 507..552 CDD:465537 17/83 (20%)
Vps4_C <545..585 CDD:462762 9/39 (23%)
Blue background indicates that the domain is not in the aligned region.

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