DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and Vps4a

DIOPT Version :9

Sequence 1:NP_001285396.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_569053.1 Gene:Vps4a / 116733 MGIID:1890520 Length:437 Species:Mus musculus


Alignment Length:440 Identity:330/440 - (75%)
Similarity:379/440 - (86%) Gaps:10/440 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 TTLQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQGEKAKDSIRAKCLQYLDRAE 69
            :||||||||||||||||:.|||.||||||:|.||||||.|||||..:|||:||||||:|||||||
Mouse     4 STLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAE 68

  Fly    70 KLKEYLK---KGKKKPIKEGGESSAKDDKDKKSDSDDEDGDDPEKKKLQSKLEDAIVIEKPKVQW 131
            |||:||:   |..|||:||      ...:.|.||||.| ||:|||||||.:|..|:|:|||.::|
Mouse    69 KLKDYLRNKEKHGKKPVKE------NQSEGKGSDSDSE-GDNPEKKKLQEQLMGAVVMEKPNIRW 126

  Fly   132 SDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFS 196
            :|||||:.||||||||||||||||.||||||.||:||||||||||||||||||||||||.|||||
Mouse   127 NDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 191

  Fly   197 VSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQMQ 261
            |||||||||||||||||||||||||||||||||||||:||:|.:|::||:::.||||||||||||
Mouse   192 VSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQ 256

  Fly   262 GVGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKE 326
            ||||:.||.||||||||||||||||||||||||||||||..||..||::|||:|.|.||:.::.|
Mouse   257 GVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHE 321

  Fly   327 LAGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVE 391
            ||.||||||||||||:|||:||:||||||:|||||:|.|||.||...:::|||.||||||.||:|
Mouse   322 LARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIE 386

  Fly   392 MNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQE 441
            |.|||||.|||.||.|.|.|||:||:.|:||||.|||.|::||:||||||
Mouse   387 MTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_001285396.1 MIT_VPS4 6..69 CDD:239141 51/62 (82%)
RecA-like_VPS4 126..296 CDD:410929 146/169 (86%)
AAA_lid_3 323..361 CDD:407720 29/37 (78%)
Vps4_C 379..439 CDD:401324 41/59 (69%)
Vps4aNP_569053.1 PTZ00454 4..348 CDD:240423 268/350 (77%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 75..106 15/37 (41%)
RecA-like_VPS4 121..291 CDD:410929 146/169 (86%)
Vps4_C 374..434 CDD:401324 41/59 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 239 1.000 Domainoid score I2270
eggNOG 1 0.900 - - E1_KOG0739
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H69132
Inparanoid 1 1.050 671 1.000 Inparanoid score I736
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53561
OrthoDB 1 1.010 - - D321685at33208
OrthoFinder 1 1.000 - - FOG0002106
OrthoInspector 1 1.000 - - otm43171
orthoMCL 1 0.900 - - OOG6_100670
Panther 1 1.100 - - LDO PTHR23074
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1655
SonicParanoid 1 1.000 - - X1557
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.870

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