DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and katnal2

DIOPT Version :9

Sequence 1:NP_001285396.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_001090643.1 Gene:katnal2 / 100036615 XenbaseID:XB-GENE-5827282 Length:542 Species:Xenopus tropicalis


Alignment Length:325 Identity:144/325 - (44%)
Similarity:197/325 - (60%) Gaps:40/325 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 GDDPEKKKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILL 170
            |.:.|.::|.:.:...|.::.|.|:|.|:.||||||..:||||:.||::||||||...||||:||
 Frog   232 GGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIRYPQLFTGILSPWKGLLL 296

  Fly   171 FGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEID 235
            :|||||||:.||||||||.| :|||::|:|.::|||.|:|||||:.||||||.|.||.||:||::
 Frog   297 YGPPGTGKTLLAKAVATECN-TTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELE 360

  Fly   236 SMCSARS---DNENDSVRRIKTEFLVQMQGVGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIP 297
            |:.|.|.   ..|::..||:|||.||||.|:....|.:.||.|:|:||.||.|:.||.||||.:.
 Frog   361 SVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLRRLEKRILVD 425

  Fly   298 LPEAHARLVMFKIHL---GNTTHV--LTEQDLKELAGKTEGYSGADISIVVRDALMEPVRKVQTA 357
            ||...||..|.:..|   .|::.|  .|:.|...|..:|:||||:||.:|.::|.|.||||:..|
 Frog   426 LPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDA 490

  Fly   358 THFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPT 422
            ..         .:|.|..|                    :|...|  ..||..|.|:.|:.|||:
 Frog   491 LE---------NHHSEHKN--------------------LPVISL--DTVTTSDFLEVLAHTKPS 524

  Fly   423  422
             Frog   525  524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_001285396.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 101/172 (59%)
AAA_lid_3 323..361 CDD:407720 17/37 (46%)
Vps4_C 379..439 CDD:401324 10/44 (23%)
katnal2NP_001090643.1 LisH 25..57 CDD:128913
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 94..126
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 142..168
SpoVK <245..526 CDD:223540 141/312 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D787710at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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