DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps4 and katnal2

DIOPT Version :10

Sequence 1:NP_573258.1 Gene:Vps4 / 32777 FlyBaseID:FBgn0283469 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_001090643.1 Gene:katnal2 / 100036615 XenbaseID:XB-GENE-5827282 Length:542 Species:Xenopus tropicalis


Alignment Length:325 Identity:144/325 - (44%)
Similarity:197/325 - (60%) Gaps:40/325 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 GDDPEKKKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEAVILPIKFPQLFTGKRIPWKGILL 170
            |.:.|.::|.:.:...|.::.|.|:|.|:.||||||..:||||:.||::||||||...||||:||
 Frog   232 GGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIRYPQLFTGILSPWKGLLL 296

  Fly   171 FGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEID 235
            :|||||||:.||||||||.| :|||::|:|.::|||.|:|||||:.||||||.|.||.||:||::
 Frog   297 YGPPGTGKTLLAKAVATECN-TTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELE 360

  Fly   236 SMCSARS---DNENDSVRRIKTEFLVQMQGVGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIP 297
            |:.|.|.   ..|::..||:|||.||||.|:....|.:.||.|:|:||.||.|:.||.||||.:.
 Frog   361 SVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLRRLEKRILVD 425

  Fly   298 LPEAHARLVMFKIHL---GNTTHV--LTEQDLKELAGKTEGYSGADISIVVRDALMEPVRKVQTA 357
            ||...||..|.:..|   .|::.|  .|:.|...|..:|:||||:||.:|.::|.|.||||:..|
 Frog   426 LPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDA 490

  Fly   358 THFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPT 422
            ..         .:|.|..|                    :|...|  ..||..|.|:.|:.|||:
 Frog   491 LE---------NHHSEHKN--------------------LPVISL--DTVTTSDFLEVLAHTKPS 524

  Fly   423  422
             Frog   525  524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps4NP_573258.1 MIT_VPS4 6..69 CDD:239141
RecA-like_VPS4 126..296 CDD:410929 101/172 (59%)
AAA_lid_3 323..361 CDD:465537 17/37 (46%)
Vps4_C 379..439 CDD:462762 10/44 (23%)
katnal2NP_001090643.1 LisH 25..57 CDD:128913
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 94..126
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 142..168
RPT1 197..526 CDD:440835 144/325 (44%)
Blue background indicates that the domain is not in the aligned region.

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