DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gss1 and gss

DIOPT Version :9

Sequence 1:NP_788925.2 Gene:Gss1 / 32775 FlyBaseID:FBgn0030882 Length:562 Species:Drosophila melanogaster
Sequence 2:XP_012827128.1 Gene:gss / 493407 XenbaseID:XB-GENE-976512 Length:506 Species:Xenopus tropicalis


Alignment Length:542 Identity:198/542 - (36%)
Similarity:288/542 - (53%) Gaps:84/542 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 AEDELLEVTAK-AKDYAIMHGAAMRSKTA-FSPDSLNFAPFVLVPSSFPRKEFEKAVALQPIINR 81
            ::..|||..|. |.|.|::.|..||:|.: .|.|.:||||..|:||..|:..||:|.::|...|.
 Frog    42 SDTTLLEELAPIAIDSALLQGVLMRTKASPNSSDVVNFAPLTLLPSPVPKALFEQAKSVQEDFNL 106

  Fly    82 LMHNVAHDEEFITTTLAETIKVDEFTANLFNIYRKVLAHGFTQKTSLGMLRSDLML---ESGCPE 143
            |:..::.|.:|:...|:.|.|||:|...|..|.|:|...|..|:..||:.|||.|.   :.|.|.
 Frog   107 LVDRISQDTDFLEKALSSTAKVDDFIQRLLKIQRQVKKEGCEQEVFLGINRSDYMFDCRDDGTPA 171

  Fly   144 LSPRALRTAAGEDRGQDAGAAVGQIAGANGAAGVGTAAGTGSKEEEHREVQLSRVTKEPERRATG 208
            |                                                                
 Frog   172 L---------------------------------------------------------------- 172

  Fly   209 AQSAYCCWKQVEINTIASGFGHLGPASKTIQRFVLSELGHADKLHNMPDNNALAGLCDGMVKAWD 273
                    ||:||||||:.||.|......:.:.||..|..:::..|:..||.:.|:..|:..:|.
 Frog   173 --------KQIEINTIAASFGGLSARVPEVHQHVLKVLKKSEEASNILPNNPVEGIAWGIASSWA 229

  Fly   274 IYAKPQAVILFIIEDVSYNICDQRFHEFYIRETYPHIKVLRRTLTEVHREGKLGQSKELLLGSQE 338
            :|....||:||::|:|..||.|||..|..:.:.  :::.:||.|.:|:..|.|.:.:.|.|...|
 Frog   230 VYGSTSAVVLFLVENVQRNILDQRCIENELMKR--NVRTIRRRLADVYERGSLDKDRGLFLDGYE 292

  Fly   339 VAVIYFRAGYEPGHYHSQADWDARYLMETSLAIKCPSIHYHLAGTKKVQQALAQPAVLERFIND- 402
            :||.|||.||.|..|..| ||:||.::|.|.|.|||.|...|.||||:||.|.:|.:||:|:.| 
 Frog   293 IAVAYFRTGYVPQDYTEQ-DWEARLMLERSRATKCPDIATQLVGTKKIQQELCRPHILEKFLPDN 356

  Fly   403 PEEIKAVGKIFTGLYSLDDNEAGNASYEMALRTPERFVLKPQREGGGNNVYGVDIPDALKR-MSR 466
            ||.:..:.:.|.||||||..|.|:.:.:.||..|::|||||||||||||:||.::...|:. ...
 Frog   357 PEAVARIRETFAGLYSLDTGEEGDEAVKAALANPDQFVLKPQREGGGNNLYGEELKAKLEECKDS 421

  Fly   467 VERSAWILMDLIHPPLTKGYMVRPGGDMPPQIVDMVSELGIFGVVIGDAEHIVHNYQAGHMLRTK 531
            .||:::||||.|:|..||..::|.||  |.||.:.:||||:|||.:..:..:::|.|.||:||||
 Frog   422 EERNSYILMDKINPKTTKNCLLRAGG--PVQISECISELGMFGVYVRRSGEMIYNEQVGHLLRTK 484

  Fly   532 LSTANEGGVAAGLGALDSPYLI 553
            .....:||||||:..||:|||:
 Frog   485 AIEHADGGVAAGVAVLDNPYLV 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gss1NP_788925.2 GSH_synth_ATP 20..552 CDD:281854 196/538 (36%)
gssXP_012827128.1 eu-GS 39..506 CDD:238140 197/540 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 281 1.000 Domainoid score I1647
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H148
Inparanoid 1 1.050 282 1.000 Inparanoid score I2823
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1189955at2759
OrthoFinder 1 1.000 - - FOG0005180
OrthoInspector 1 1.000 - - oto102404
Panther 1 1.100 - - LDO PTHR11130
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3696
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.160

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