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Protein Alignment Gss1 and Gss

DIOPT Version :9

Sequence 1:	NP_788925.2	Gene:	Gss1 / 32775	FlyBaseID:	FBgn0030882	Length:	562	Species:	Drosophila melanogaster
Sequence 2:	NP_032206.1	Gene:	Gss / 14854	MGIID:	95852	Length:	474	Species:	Mus musculus

Alignment Length:	535	Identity:	198/535 - (37%)
Similarity:	279/535 - (52%)	Gaps:	77/535 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    20 EDELLEVTAKAKDYAIMHGAAMRS-KTAFSPDSLNFAPFVLVPSSFPRKEFEKAVALQPIINRLM 83
            |.:|.|:..:|.|.|:..|..:|| :...|.|.:.:|||.|.||..|....|:|.|:|...|.|:
Mouse    12 EKQLEELAKQAIDRALAEGVLLRSAQHPSSSDVVTYAPFTLFPSPVPSALLEQAYAVQMDFNILV 76

  Fly    84 HNVAHDEEFITTTLAETIKVDEFTANLFNIYRKVLAHGFTQKTSLGMLRSDLMLESGCPELSPRA 148
            ..|:.:..|:..||:.|||.|::||.||:||::||..|..|...||:.|||.|.:
Mouse    77 DAVSQNPAFLEQTLSSTIKKDDYTARLFDIYKQVLKEGIAQTVFLGLNRSDYMFQ---------- 131

  Fly   149 LRTAAGEDRGQDAGAAVGQIAGANGAAGVGTAAGTGSKEEEHREVQLSRVTKEPERRATGAQSAY 213
                                .||:|:..:
Mouse   132 --------------------CGADGSKAL------------------------------------ 140

  Fly   214 CCWKQVEINTIASGFGHLGPASKTIQRFVLSELGHADKLHNMPDNNALAGLCDGMVKAWDIYAKP 278
               ||:|||||::.||.|...:..:.|.||:.|....:...:..||...||..|:.|||::|...
Mouse   141 ---KQIEINTISASFGGLASRTPAVHRHVLNVLNKTKEASKILSNNPSKGLALGIAKAWELYGSA 202

  Fly   279 QAVILFIIEDVSYNICDQRFHEFYIRETYPHIKVLRRTLTEVHREGKLGQSKELLLGSQEVAVIY 343
            .||:|.|.::...||.|||..|..:.:...|  |:|....:|...|.|.|::.|.:..|||||:|
Mouse   203 NAVVLLIAQEKERNIFDQRAVENELLDRKIH--VIRGRFEDVSERGSLDQNRRLFMDDQEVAVVY 265

  Fly   344 FRAGYEPGHYHSQADWDARYLMETSLAIKCPSIHYHLAGTKKVQQALAQPAVLERFI-NDPEEIK 407
            ||.||.|..|:|| :|:||.::|.|.|.|||.|...|||||||||.|::..:||..: ..||.:.
Mouse   266 FRDGYMPSQYNSQ-NWEARLMLERSRAAKCPDIAIQLAGTKKVQQELSRVGLLEALLPGQPEAVA 329

  Fly   408 AVGKIFTGLYSLDDNEAGNASYEMALRTPERFVLKPQREGGGNNVYGVDIPDALKRM-SRVERSA 471
            .:...|.||||||..|.|:.:...||..|..|||||||||||||:||.::..||::: ...||::
Mouse   330 RLRATFAGLYSLDMGEEGDQAIAEALAAPSHFVLKPQREGGGNNLYGEEMVQALEQLKDSEERAS 394

  Fly   472 WILMDLIHPPLTKGYMVRPGGDMPPQIVDMVSELGIFGVVIGDAEHIVHNYQAGHMLRTKLSTAN 536
            :|||:.|.|...:..::|||.  |.|:|..:||||||||.:.....:|.|...||:||||.....
Mouse   395 YILMEKIEPEPFRNCLLRPGS--PAQVVQCISELGIFGVYVRQGTTLVMNKHVGHLLRTKAVEHA 457

  Fly   537 EGGVAAGLGALDSPY 551
            :||||||:..||:||
Mouse   458 DGGVAAGVAVLDNPY 472

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.