DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp8 and Actrt3

DIOPT Version :9

Sequence 1:NP_573251.1 Gene:Arp8 / 32769 FlyBaseID:FBgn0030877 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_083966.1 Gene:Actrt3 / 76652 MGIID:1923902 Length:369 Species:Mus musculus


Alignment Length:452 Identity:82/452 - (18%)
Similarity:155/452 - (34%) Gaps:157/452 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 AVDARNY-DIHFPIQRGELNVHNEKGGSLQASMQHLERIWSYALEERLKIPLRKLGTHCAVLV-- 230
            |.:.|:: .|.:|::||           |.:|...:|.:|.:..:..|.:.    .:...|||  
Mouse    55 AQERRSFLSISYPVERG-----------LISSWGDMEIMWKHIYDYNLNLN----ASDGPVLVTE 104

  Fly   231 --VNDVYVRRHLREFVTLLLRRLGFRRCFLVQDSVASTFGAGIGYGCVVDIGAQKTSIA------ 287
              :|.:..|:|:.|   :....||....::...:|.:.|.||...|.|::.||..|...      
Mouse   105 PALNPLADRQHISE---VFFENLGVPAFYMSAQAVLALFAAGFTTGLVLNSGAGITQCVPIFEGY 166

  Fly   288 CIEDGISQLDARVRLSYGGGDLDQVLLLLLRKCGFPYRECNVQESYVDAHLLDELKEKFCHLNAS 352
            |:..|:.||:.      .|.||...|::||:..|.......      |..::.::||..|::..:
Mouse   167 CLSHGVKQLNV------AGSDLTSYLMMLLKGDGIMLLRTG------DRKVVTDIKENACYVAMN 219

  Fly   353 VCGAQEKHFNLRK----HNGQWLRYTIQVGDEALMAPLALFHTELLNI--TGRTKAVFTQQAVQD 411
            ......|..||.|    .:|:    |:::..:....|.|||...|:|:  .|..|.         
Mouse   220 YEDEMTKDSNLEKIYTLPDGK----TVKLHKQLFHCPEALFSPYLVNVDAPGIDKM--------- 271

  Fly   412 QYDCEDCFDAEYLKETGRKNGVRGGDILQLSTSAGYQPRPQLPVTADDEELIVVDQDETISNCQS 476
                  ||                |.|::..|                                 
Mouse   272 ------CF----------------GSIMKCDT--------------------------------- 281

  Fly   477 QLGAQTAGGQMNSNGCYHNGQGLVLPLDQAIIQSINRLSSYETKRKMFGSILLVGSSAKLPGLAA 541
                                                     :.:...|.:|:|.|.|...|||..
Mouse   282 -----------------------------------------DLRNSFFSNIILSGGSTSFPGLDK 305

  Fly   542 WLEQRISQQVQSEVNV-LIKGMDAGMVAWKGAAIMSVLESARELWISQNDWQRHGLRVLRER 602
            .|.:.:::...:...| :|...:..:..|.|.:|::.|.:.:::||:..:::..|..::.:|
Mouse   306 RLIKDVAKLAPANTAVQVIAPPERKISVWMGGSILASLSAFQDMWITAAEFEEVGPNIVHQR 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp8NP_573251.1 NBD_sugar-kinase_HSP70_actin 202..603 CDD:302596 74/418 (18%)
Actrt3NP_083966.1 ACTIN 5..369 CDD:214592 82/452 (18%)
NBD_sugar-kinase_HSP70_actin 9..369 CDD:302596 82/452 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.