DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp8 and Arp1

DIOPT Version :9

Sequence 1:NP_573251.1 Gene:Arp8 / 32769 FlyBaseID:FBgn0030877 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_524331.2 Gene:Arp1 / 41566 FlyBaseID:FBgn0011745 Length:376 Species:Drosophila melanogaster


Alignment Length:435 Identity:73/435 - (16%)
Similarity:147/435 - (33%) Gaps:138/435 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 IHFPIQRGELNVHNEKGGSLQASMQHLERIWSYALEERLKIPLRKLGT----HCAVLVVNDVYVR 237
            |.:|::.|.:...|:           :||||||...:      .:|.|    |..:|....:..|
  Fly    71 IRYPMEHGIVTDWND-----------MERIWSYIYSK------EQLATFTEDHPVLLTEAPLNPR 118

  Fly   238 RHLREFVTLLLRRLGFRRCFLVQDSVASTFGAGIGYGCVVDIGAQKTSIACIEDGISQLDARVRL 302
            |:..:........:.....|:...:|.|.:..|...|.|:|.|...|....|.:|.:...:.:|:
  Fly   119 RNREKAAEFFFEGINAPALFVSMQAVLSLYATGRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRV 183

  Fly   303 SYGGGDLDQVLLLLLRKCGFPYRECNVQESYVDAHLLDELKEKFCHLNASVC---GAQEKHFNLR 364
            ...|.|:.:.|..|:|:.||.:|      |..:..::..:|||.|:|..:..   ..:.:.|..:
  Fly   184 DIAGRDVTRYLKTLIRREGFNFR------STAEFEIVRSIKEKVCYLATNPQKEETVETEKFAYK 242

  Fly   365 KHNGQWLRYTIQVGDEALMAPLALFHTELLNITGRTKAVFTQQAVQDQYDCEDCFDAEYLKETGR 429
            ..:|:    ..::|.....||..||..:||.                    |:|           
  Fly   243 LPDGK----IFEIGPARFRAPEVLFRPDLLG--------------------EEC----------- 272

  Fly   430 KNGVRGGDILQLSTSAGYQPRPQLPVTADDEELIVVDQDETISNCQSQLGAQTAGGQMNSNGCYH 494
             .|:.  |:|..|...                                                 
  Fly   273 -EGIH--DVLMYSIEK------------------------------------------------- 285

  Fly   495 NGQGLVLPLDQAIIQSINRLSSYETKRKMFGSILLVGSSAKLPGLAAWLEQRISQQVQSEVNVLI 559
                                |..:.::.::.:|:|.|.|....|....|...:.:....::.:.|
  Fly   286 --------------------SDMDLRKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRI 330

  Fly   560 KGMDAGMVA-WKGAAIMSVLESARELWISQNDWQRHGLRVLRERS 603
            ......:.: |.|.:|::.|::.:::|||:.:::..|.:.:..::
  Fly   331 AAPQERLYSTWMGGSILASLDTFKKMWISKREYEEEGQKAVHRKT 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp8NP_573251.1 NBD_sugar-kinase_HSP70_actin 202..603 CDD:302596 69/408 (17%)
Arp1NP_524331.2 NBD_sugar-kinase_HSP70_actin 5..376 CDD:302596 73/435 (17%)
ACTIN 9..376 CDD:214592 73/435 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467794
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11937
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.