DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp8 and Actl7b

DIOPT Version :9

Sequence 1:NP_573251.1 Gene:Arp8 / 32769 FlyBaseID:FBgn0030877 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001020588.1 Gene:Actl7b / 313183 RGDID:1305655 Length:417 Species:Rattus norvegicus


Alignment Length:624 Identity:107/624 - (17%)
Similarity:189/624 - (30%) Gaps:262/624 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 HPAPPPIG-----------LPQPQ------------AQPLEAPKI--IVIHPGSQHLRIGRAADL 53
            :|:|.|:|           ||.|:            |:|.:..||  :||..|||:.:.|.|.:.
  Rat     6 NPSPKPMGTAQGDPGEAGTLPAPEAGIRDTGSTQLKAKPKKIRKIKALVIDLGSQYCKCGYAGEP 70

  Fly    54 NPLTLLHAVAYRRRPGASDRPHHDPLLPPLDNVNSNSGLMVEFEEQRLVVSRILQHCVVDNKNRL 118
            .|...:.:...:|                                                    
  Rat    71 RPTYFISSTVGKR---------------------------------------------------- 83

  Fly   119 RVATPPQQLAHFNRSSQAEKVPAPSGQMADEPWLDREAPVLFDDRILRLGAVDARNYDIHFPIQR 183
                             :.::.|.:|....|.::..|        :|.:.|    :..:..|::.
  Rat    84 -----------------SAEMAADAGDTFKETYVGHE--------LLNMEA----SLKLVNPLKH 119

  Fly   184 GELNVHNEKGGSLQASMQHLERIWSYALEERLKIPLRKLGTHCAVLVVNDVYVRRHLRE-FVTLL 247
            |           :......::.||.|.....:||    |....||||.:........|| :..|:
  Rat   120 G-----------VVVDWDCIQNIWEYIFHTAMKI----LPEEHAVLVSDPPLSPTSNREKYAELM 169

  Fly   248 LRRLGFRRCFLVQDSVASTFGAGIGYGCVVDIGAQKTSIACIEDG--ISQLDARVRLSYGGGDLD 310
            ....|.....:...::.|.:..|...|.||:.|...:.:..|.:|  :..|.:||  .|.|.||.
  Rat   170 FETFGIPAMHVTSQALLSIYSYGKTSGLVVESGHGVSHVVPISEGDLLPGLPSRV--DYAGCDLT 232

  Fly   311 QVLLLLLRKCGFPYRECNVQESYVDAHLLDELKEKFCHL-----NASVCGAQEKHFNLRKHNGQW 370
            ..|:.||.:.|..:.:.::       |:::.:|:|.|:.     .....|..|.|.:....:|: 
  Rat   233 NYLMQLLNEAGHKFSDDHL-------HIIEHIKKKCCYAALLPEEEMSLGLDELHVDYELPDGK- 289

  Fly   371 LRYTIQVGDEALMAPLALFHTELLNITGRTKAVFTQQAVQDQYDCEDCFDAEYLKETGRKNGVRG 435
               .|.:|.|.......||...|:.                                        
  Rat   290 ---VITIGQERFRCSEMLFKPSLVG---------------------------------------- 311

  Fly   436 GDILQLSTSAGYQPRPQLPVTADDEELIVVDQDETISNCQSQLGAQTAGGQMNSNGCYHNGQGLV 500
                  ||..|.   |:|..|.             :..||                    |.|. 
  Rat   312 ------STQPGL---PELTATC-------------LDRCQ--------------------GTGF- 333

  Fly   501 LPLDQAIIQSINRLSSYETKRKMFGSILLVGSSAKLPGLAAWLEQRISQQVQSEVNVLIKGMDAG 565
                               |.:|..::||.|....|.|        ..::.|.|:::|..| |:.
  Rat   334 -------------------KEEMAANVLLCGGCTMLDG--------FPERFQRELSLLCPG-DSP 370

  Fly   566 MVA---------WKGAAIMSVLESARELWISQNDWQRHG 595
            .||         |.|.:|::.|::.::||:|:.:::..|
  Rat   371 TVAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERG 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp8NP_573251.1 NBD_sugar-kinase_HSP70_actin 202..603 CDD:302596 79/411 (19%)
Actl7bNP_001020588.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39 7/32 (22%)
ACTIN 51..417 CDD:214592 96/579 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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