DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp8 and Actl6b

DIOPT Version :9

Sequence 1:NP_573251.1 Gene:Arp8 / 32769 FlyBaseID:FBgn0030877 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_006249182.1 Gene:Actl6b / 288563 RGDID:1307763 Length:444 Species:Rattus norvegicus


Alignment Length:409 Identity:72/409 - (17%)
Similarity:133/409 - (32%) Gaps:131/409 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 VLVVNDVYVRRHLREFVT-LLLRRLGFRRCFLVQDSVASTFGAGIGYGCVVDIGAQKTSIACIED 291
            ||:....:..|..||.:| |:..:......||.:.:|.:.|..|...|.|:|.||..|:...:.|
  Rat   135 VLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHD 199

  Fly   292 GISQLDARVRLSYGGGDLDQVLLLLLRKCGFPYRECN--VQESYVD---AHLL---DELKEKFCH 348
            |.......|:....|              .|...:|.  .||..:|   .:::   :.::|    
  Rat   200 GYVLQQGIVKSPLAG--------------DFISMQCRELFQEMAIDIIPPYMIAAKEPVRE---- 246

  Fly   349 LNASVCGAQ---EKHFNLRKHNGQWLRY------------TIQVG----DEALMAPLALFHTELL 394
                  ||.   :|...|.:.:..|..|            .:||.    ||.:.|.:...|.|:.
  Rat   247 ------GAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMP 305

  Fly   395 NITGRTKAVFTQQAVQDQYDCEDCFDAEYLKETGRKNGVRGGDILQLSTSAGYQPRPQLPVTADD 459
            |            .....|..|.....|.|.:.....|:.|..:|                    
  Rat   306 N------------GYNTDYGAERLRIPEGLFDPSNVKGLSGNTML-------------------- 338

  Fly   460 EELIVVDQDETISNCQSQLGAQTAGGQMNSNGCYHNGQGLVLPLDQAIIQSINRLSSYETKRKMF 524
                                                |.|.|      :..||. :...:.:..::
  Rat   339 ------------------------------------GVGHV------VTTSIG-MCDIDIRPGLY 360

  Fly   525 GSILLVGSSAKLPGLAAWLEQRISQQVQSEVNVLI----KGMDAGMVAWKGAAIMSVLESARELW 585
            ||:::.|.:..|.|....|.:.:||:....:.:.:    ..|:.....|.|.:|::.|.:.:::|
  Rat   361 GSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMW 425

  Fly   586 ISQNDWQRHGLRVLRERSP 604
            ||:.:::..|.:.:..:.|
  Rat   426 ISKQEYEEGGKQCVERKCP 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp8NP_573251.1 NBD_sugar-kinase_HSP70_actin 202..603 CDD:302596 71/406 (17%)
Actl6bXP_006249182.1 Actin 11..444 CDD:394979 71/407 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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