DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp8 and F42C5.9

DIOPT Version :9

Sequence 1:NP_573251.1 Gene:Arp8 / 32769 FlyBaseID:FBgn0030877 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_501169.1 Gene:F42C5.9 / 177504 WormBaseID:WBGene00018349 Length:552 Species:Caenorhabditis elegans


Alignment Length:587 Identity:114/587 - (19%)
Similarity:191/587 - (32%) Gaps:207/587 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KIIVIHPGSQHLRIGRAADLNPLTLLHAVAYRRRPGASDRPHHDPLLPPLDNVNSNSGLMVEFEE 98
            :.:.||.|.:|::.                |.|.|.|                        .|::
 Worm   124 RTLTIHGGREHVKY----------------YCRVPSA------------------------VFDK 148

  Fly    99 QRLVVSRILQHC---VVDNKNRLRVATPPQQLAHFNRSSQAEKVPAPS---GQMADEPWLDRE-- 155
            .|   ...|.||   ::|    ..|...|:...|........::.:.|   |.:..||.|.:.  
 Worm   149 WR---QSFLSHCASSLID----AYVKPIPRAFQHLTERILILELGSCSIRAGVLTTEPSLPQSFF 206

  Fly   156 --APVLFDDRILRLGAVDA------RNYDIHFPIQRGELNV--HNEKGGSLQASMQHLER----- 205
              ..|..||..:.:|. ||      .|.|...||...:.:|  ::.....|:|.:..:.:     
 Worm   207 PAIAVRTDDGKIFVGE-DAYRPEIRHNGDFVRPISATDPSVERYSIDKDVLKAVIGKVTKELKVE 270

  Fly   206 IWSYALEERLKIPLRKLGTHCAVLVVNDVYVRRHLREFVTLLLRRLGFRRCFLVQDSVASTFGAG 270
            .|.|.:  .|.|| :.:.|   ||:          .|.:.:.|..:.|:...:.:......:...
 Worm   271 PWKYKV--LLSIP-QNIPT---VLI----------GELLQICLEDIKFQSAGITRQPSLILYAYD 319

  Fly   271 IGYGCVVDIGAQKTSIACIEDGISQLDARVRLSYGGGDLDQVLLLLLRKCGFPYRECNVQESYVD 335
            :..|.||||| ::.:|..:.||. .:::.:                   |..||....:.:|   
 Worm   320 VTTGVVVDIG-ERVNIVPVIDGY-VVESAI-------------------CSIPYGSQQMGDS--- 360

  Fly   336 AHLLDELKEKFCHLNASVCGAQEKHFNLRKHNGQWLRYTIQVGDEALMAPLALFHTELLNITGRT 400
                         |.||          |..||..  .|..|...|.|:...||            
 Worm   361 -------------LRAS----------LSAHNKG--LYAFQSPVEKLILRFAL------------ 388

  Fly   401 KAVFTQQAVQDQYDCEDCFDAEYLKETGRKNGVRGGDILQLSTSAGYQPRPQLPVTADDEELIVV 465
                    .|..|..||     |.||...:|......:...:.|.|.|.|              .
 Worm   389 --------EQTTYVPED-----YQKEEKSENKETRISLDAFTPSPGMQTR--------------F 426

  Fly   466 DQDETISNCQSQL------GAQTAGGQMNSNGCYHNGQGLVLPLDQAIIQSINRLSSYETKRKMF 524
            |.|.:...|...|      |..|              :||...:.:||:|     ...:::|.::
 Worm   427 DIDNSRFLCTEGLFKPKKWGLDT--------------KGLHQLIHEAILQ-----CPIDSRRTLY 472

  Fly   525 GSILLVGSSAKLPGLAAWLEQRIS----QQVQSEVNVLIKGMDAGMVAWKGAAIMSVLESARELW 585
            .:|.|.|.::.:||:|..|||.:|    ..:.::||:.....:|   |:.||.|::...:..:..
 Worm   473 RNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNISPWRYNA---AYLGAQIVASASTFEDSC 534

  Fly   586 IS 587
            ||
 Worm   535 IS 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp8NP_573251.1 NBD_sugar-kinase_HSP70_actin 202..603 CDD:302596 79/401 (20%)
F42C5.9NP_501169.1 ACTIN 179..552 CDD:214592 97/485 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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