DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp8 and actr3b

DIOPT Version :9

Sequence 1:NP_573251.1 Gene:Arp8 / 32769 FlyBaseID:FBgn0030877 Length:607 Species:Drosophila melanogaster
Sequence 2:XP_005162538.1 Gene:actr3b / 100038776 ZFINID:ZDB-GENE-070424-10 Length:419 Species:Danio rerio


Alignment Length:631 Identity:107/631 - (16%)
Similarity:190/631 - (30%) Gaps:263/631 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PPPIGLPQPQAQPLEAPKIIVIHPGSQHLRIGRAADLNPLTLL-HAVAYRRRPGASDRPHHDPLL 80
            |||                .||..|:.:.:||.|.:..|..:: ..:|.|......|        
Zfish     6 PPP----------------CVIDCGTGYTKIGYAGNTEPQFIMPTCIAVRESASVGD-------- 46

  Fly    81 PPLDNVNSNSGLMVEFEEQRLVVSRI--LQHCVVDNKNRLRVATPPQQLAHFNRSSQAEKVPAPS 143
                            :.||.:|..:  |...:.|..              .::.:.|.|.|...
Zfish    47 ----------------QAQRRLVKGVDDLDFFIGDEA--------------IDKPNYATKWPIRH 81

  Fly   144 GQMADEPWLDREAPVLFDDRILRLGAVDARNYDIHFPIQRGELNVHN----EKGGSLQASMQHLE 204
            |.:.|..::::     |.::::             |...|.|...||    |...:...:.::|.
Zfish    82 GIIEDWDFMEK-----FMEQVI-------------FKYLRAEPEDHNFLMTEPPLNTPENREYLA 128

  Fly   205 RIWSYALEERLKIPLRKLGTHCAVLVVNDVYVRRHLREFVTLLLRRLGFRRCFLVQDSVASTFGA 269
            .|    :.|...:|    |.:.||..|        |....:...|::|.|..             
Zfish   129 EI----MFETFNVP----GLYIAVQAV--------LALAASWTSRQVGERTL------------- 164

  Fly   270 GIGYGCVVDIGAQKTSIACIEDGISQLDARVRLSYGGGDLDQVLLLLLRKCGFPYRECNV--QES 332
               .|.|:|.|...|....:.:|.........:...|.|:...:..|||:     ||..:  ::|
Zfish   165 ---TGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRE-----REIGIPPEQS 221

  Fly   333 YVDAHLLDELKEKFCHLNASVCGAQEKHFNLRKHN---GQWLR------------YTIQVGDEAL 382
            ...|   ..:||::|:    :|....|.|.  |::   |:|::            :.|.||.|..
Zfish   222 LETA---KAVKERYCY----ICPDIVKEFT--KYDMDPGKWIKKYKGINAISKNEFQIDVGYERF 277

  Fly   383 MAPLALFHTELLNITGRTKAVFTQQAVQDQYDCEDCFDAEYLKETGRKNGVRGGDILQLSTSAGY 447
            :.|...||.|..|                                        .|.:|       
Zfish   278 LGPEIFFHPEFAN----------------------------------------PDFMQ------- 295

  Fly   448 QPRPQLPVTADDEELIVVDQDETISNCQSQLGAQTAGGQMNSNGCYHNGQGLVLPLDQAIIQSIN 512
                  |::.      ||  ||.|.||                           |:|        
Zfish   296 ------PISD------VV--DEVIQNC---------------------------PID-------- 311

  Fly   513 RLSSYETKRKMFGSILLVGSSAKLPGLAAWLEQ----------RISQQVQS--------EVNVLI 559
                  .:|.::.:|:|.|.|.........|::          |:|:::..        ||.|:.
Zfish   312 ------VRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRVVDARLRLSEELSGGRIKPKPMEVQVIS 370

  Fly   560 KGMDAGMVAWKGAAIMSVLESARELWISQNDWQRHGLRVLRERSPF 605
            ..|....| |.|.::::......::..::.|::.:|.|:.|....|
Zfish   371 HHMQRYAV-WFGGSMLASTPEFFQVCHTKKDYEEYGPRICRHNPVF 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp8NP_573251.1 NBD_sugar-kinase_HSP70_actin 202..603 CDD:302596 76/435 (17%)
actr3bXP_005162538.1 COG5277 1..411 CDD:227602 105/625 (17%)
PTZ00280 3..416 CDD:240343 107/631 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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