DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8142 and RFC2

DIOPT Version :9

Sequence 1:NP_573245.1 Gene:CG8142 / 32763 FlyBaseID:FBgn0030871 Length:353 Species:Drosophila melanogaster
Sequence 2:NP_176504.1 Gene:RFC2 / 842620 AraportID:AT1G63160 Length:333 Species:Arabidopsis thaliana


Alignment Length:368 Identity:124/368 - (33%)
Similarity:177/368 - (48%) Gaps:109/368 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PWVEKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDR 95
            ||||||||..|.|:|...:.|:.|:.....|::||::|.||||||||::|||.:.::.|..:|:.
plant    16 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGTNYKEA 80

  Fly    96 ILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEK 160
            :|||||||:|||:|||.|||.|:|...:  .|.|:    .|::|||||||||..||.|||||:|.
plant    81 VLELNASDDRGIDVVRNKIKMFAQKKVT--LPPGR----HKVVILDEADSMTSGAQQALRRTIEI 139

  Fly   161 ESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKIS 225
            .|.||||.|.||..::||.||.|||:..||..|.:.:::.||..:...|.|....:..::|:..:
plant   140 YSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAIIFTA 204

  Fly   226 GGDLRRAITTLQ----------------------------------------SCYRLK------- 243
            .||:|:|:..||                                        :|..||       
plant   205 DGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRNVLESKFDIACDGLKQLYDLGY 269

  Fly   244 GPEHIINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVH 308
            .|..||.|  ||.   :|..|.:.:||::          :|::|.||:                 
plant   270 SPTDIITT--LFR---IIKNYDMAEYLKL----------EFMKETGFA----------------- 302

  Fly   309 HPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILA 351
            |                   .|:.||...|||:     |.:||
plant   303 H-------------------MRICDGVGSYLQL-----CGLLA 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8142NP_573245.1 rfc 31..344 CDD:234763 121/359 (34%)
AAA 45..187 CDD:99707 73/141 (52%)
AAA_assoc_2 211..>256 CDD:292811 16/91 (18%)
Rep_fac_C <293..344 CDD:285713 7/50 (14%)
RFC2NP_176504.1 PLN03025 16..333 CDD:178596 124/368 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0470
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1071197at2759
OrthoFinder 1 1.000 - - FOG0000505
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.