DRSC/TRiP Functional Genomics Resources

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Protein Alignment Socs16D and socs6b

DIOPT Version :9

Sequence 1:NP_001259662.1 Gene:Socs16D / 32760 FlyBaseID:FBgn0030869 Length:1021 Species:Drosophila melanogaster
Sequence 2:NP_955919.1 Gene:socs6b / 322950 ZFINID:ZDB-GENE-030131-1670 Length:532 Species:Danio rerio


Alignment Length:555 Identity:133/555 - (23%)
Similarity:219/555 - (39%) Gaps:154/555 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   526 TSDGDGEKSKHGKYRTPVGVGMGQVSESEPLHMTLD---EVKQFYHTLYSDAGKPTPKPMVKSSN 587
            :||.|.|..|..|.|          |:||.|..||.   ..||              ||.||..:
Zfish    51 SSDLDNEDEKRSKVR----------SKSEGLMGTLKRRLSAKQ--------------KPKVKGGS 91

  Fly   588 ETIWSVSTNTTTTTARTRSSVGTTRGGGGPPGAGNGAGGASSDGGVGGGSAGGGGGKYLSKQNKH 652
            .::.|:..:|.::::...|                                       ||     
Zfish    92 PSVCSIDDDTFSSSSAPIS---------------------------------------LS----- 112

  Fly   653 NLDNDKLNNNNNNNNNH-QPSQQQLEKPPTEH----------HNQHQPPNNKHVLHSEKKSQFTL 706
            :|.:.:.:.:.:.:::| .|:...|....:|.          .|...|.:..:.:|     |..|
Zfish   113 DLKSQRSSRSTSVHSHHYSPTPWPLRPVNSEETCIKMDVKALMNSSDPSSTLNSVH-----QDFL 172

  Fly   707 NLKQRF---CSIFRF--RRSNHSRCRGSGN--------------------------NQTGTFASA 740
            :|::.|   ...||.  |..:|.....:|:                          ...|.:...
Zfish   173 DLQREFGESSDSFRITTRVPDHHSATQNGDLHLDMDEHVPVVLGLAAQDYIQYTMPLDDGLYPDD 237

  Fly   741 NANAAATAPLIPPIAVITSAPGAAGQTQLASELNGTLITAEADEPNADLRKKFQSRA-------- 797
            ..:.:.......|:.::..:.|.....|....::..|::.:....::.:.:.|.:.|        
Zfish   238 EGSRSFCLDATTPMDIVPQSEGCGSLHQDEEPIDQDLLSPDIFMESSSVNQLFLNTANVLLQGSR 302

  Fly   798 --------LPPLPKKALPFTAAAYA----------IEAVKSEPEEVK-----TNAIQEPRAL--- 836
                    |||||...|..:.:.:|          :..:..:|....     .:|:|....:   
Zfish   303 LEAPLSPLLPPLPDSYLQRSFSGFAGTHAQVAERVMHHLNFDPNSAPGVQRVYDAVQNSGPMVVT 367

  Fly   837 QFTSSIEKVKDYGWYWGPLSSEAAEKVLSSEPDGSFIVRDSSDDHYIFSLSFKLNNCVRHVRIEQ 901
            ..|:.::|:...||||||::...||:.|::.|||||:|||||||.|:.||||:......|.|||.
Zfish   368 SLTAELKKLAKQGWYWGPITRWEAEEKLTNLPDGSFLVRDSSDDRYLLSLSFRSQTKTLHTRIEH 432

  Fly   902 DQGTFSFGSYAKFKSQ-TITEFIEKAVEHSRSGRYLFFLHRRPEHGPMRVQLTNPVSRFKHVQSL 965
            ..|:|||......:.. :|.:.|:.:|:.|.:|.:.:...|.|......|:||||||||..|:||
Zfish   433 SNGSFSFYEQPDIEGHVSIVDLIDNSVKDSENGAFCYSRSRLPGSATYPVRLTNPVSRFMQVRSL 497

  Fly   966 QHMCRFVILKAVIRKDLIQTLPLPRRLLDYLNYKH 1000
            |::||||| :...|.||||.||||.::.|||..||
Zfish   498 QYLCRFVI-RQYTRIDLIQKLPLPNKMKDYLQEKH 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Socs16DNP_001259662.1 SH2_SOCS7 839..937 CDD:198251 41/98 (42%)
SOCS_SOCS7 960..1009 CDD:239710 23/41 (56%)
socs6bNP_955919.1 SH2_SOCS6 370..469 CDD:198250 41/98 (42%)
SOCS_SOCS6 492..532 CDD:239709 23/41 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8888
eggNOG 1 0.900 - - E1_KOG4566
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25935
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10155
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1970
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.910

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