DRSC/TRiP Functional Genomics Resources

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Protein Alignment Socs16D and cish

DIOPT Version :9

Sequence 1:NP_001259662.1 Gene:Socs16D / 32760 FlyBaseID:FBgn0030869 Length:1021 Species:Drosophila melanogaster
Sequence 2:XP_012816010.1 Gene:cish / 100135018 XenbaseID:XB-GENE-490099 Length:266 Species:Xenopus tropicalis


Alignment Length:262 Identity:69/262 - (26%)
Similarity:111/262 - (42%) Gaps:62/262 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   760 APGAAGQTQLASELNGTLITAEADEPNADLRKKFQSRALPPLPKKALPFTAAAYAIEAVKSEPEE 824
            |||.:.. |:...||....|..|..|                             :| |.:..|:
 Frog    35 APGFSAD-QVMHPLNSPACTRPAPNP-----------------------------VE-VPTSTED 68

  Fly   825 VKTNAIQEPRA-------LQFTSSIEKVKDYGWYWGPLSSEAAEKVLSSEPDGSFIVRDSSDDHY 882
            ..||...:.|:       |....:...:::.|||||.:::..|::.|...|:|.|:||||:...|
 Frog    69 SVTNPQPQSRSRDPEADLLCIARTFCYLRESGWYWGSITATEAKQQLQKMPEGFFLVRDSTHPSY 133

  Fly   883 IFSLSFKLNNCVRHVRIEQDQGTFSFGSYAKFKSQTITEF--IEKAVEHSRSGRYLFFLH----R 941
            :|:||.:.|....:||||...|.|...|....|.: |..|  :...|::     |:.|.|    :
 Frog   134 LFTLSVRTNRGPTNVRIEYSDGLFRLDSNCLSKPR-ILSFPDVVSLVQY-----YVSFCHSDVNK 192

  Fly   942 RP------------EHGPMRVQLTNPVSRFKHVQSLQHMCRFVILKAVIRKDLIQTLPLPRRLLD 994
            .|            |...:.::|.:|:.|.....||||:||..|.:::.....:..||||||:::
 Frog   193 EPACQTPPVPPSPKEPAAVHLKLLHPLPRGAQCPSLQHLCRLQINRSLAPNAELTELPLPRRMVE 257

  Fly   995 YL 996
            ||
 Frog   258 YL 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Socs16DNP_001259662.1 SH2_SOCS7 839..937 CDD:198251 31/99 (31%)
SOCS_SOCS7 960..1009 CDD:239710 15/37 (41%)
cishXP_012816010.1 SH2_CIS 96..183 CDD:198285 30/92 (33%)
SOCS 226..266 CDD:383010 15/34 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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