DRSC/TRiP Functional Genomics Resources

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Protein Alignment OdsH and shox2

DIOPT Version :10

Sequence 1:NP_523389.3 Gene:OdsH / 32758 FlyBaseID:FBgn0026058 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_957490.1 Gene:shox2 / 394171 ZFINID:ZDB-GENE-040426-1457 Length:299 Species:Danio rerio


Alignment Length:133 Identity:56/133 - (42%)
Similarity:73/133 - (54%) Gaps:15/133 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 NRE-LGMDPHSEQ-------RIKLDSVSPTHNIHAGSSRGIKQDPLSDEGADSNLGQNDC----- 152
            ||| |..||:.|:       .::...|.....:.:..||......|:|...|....:.||     
Zfish    36 NRESLSADPNREEISSITRSGVRSSPVREADMLASERSRDSSSPKLTDGNTDMKERKEDCKPLED 100

  Fly   153 -TESS-KKRRGRTNFNSWQLRELERVFQGSHYPDIFMREALATKLDLMEGRIAVWFQNRRAKWRK 215
             |::. |:||.||||...||.||||:|..:||||.||||.|:.:|.|.|.|:.|||||||||.||
Zfish   101 ETQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 165

  Fly   216 QEH 218
            ||:
Zfish   166 QEN 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OdsHNP_523389.3 Homeodomain 159..215 CDD:459649 35/55 (64%)
shox2NP_957490.1 Homeodomain 109..165 CDD:459649 35/55 (64%)
OAR 278..295 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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