DRSC/TRiP Functional Genomics Resources

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Protein Alignment OdsH and vsx1

DIOPT Version :10

Sequence 1:NP_523389.3 Gene:OdsH / 32758 FlyBaseID:FBgn0026058 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_571408.1 Gene:vsx1 / 30598 ZFINID:ZDB-GENE-990415-205 Length:344 Species:Danio rerio


Alignment Length:343 Identity:89/343 - (25%)
Similarity:133/343 - (38%) Gaps:107/343 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LIQQLQQAAAARGQVQHPHGSSALQLYAAAAAVNMQVSGWSSVLNL----SMDAPNPEISPNSVT 64
            |..:||...:..|...:..|.|       ||.......|.|..|.|    |:.|..|..:|    
Zfish    45 LESELQPHQSGPGAGPNGEGQS-------AAVGGFSFPGGSLPLGLGFLCSLAAQQPPGAP---- 98

  Fly    65 NSSSVYMIRQMALIQQARVAAAAVAMQQQQQQQRDLNRELGMDPHSEQRIKLDSVSPTHNIHAGS 129
                .::...:.|:|    :.......|..:||||:..:                          
Zfish    99 ----CFLPSHIPLLQ----SRTESHFMQNLEQQRDVYSD-------------------------- 129

  Fly   130 SRGIKQDPLSDEGADSNLGQND-CTESSKKRRGRTNFNSWQLRELERVFQGSHYPDIFMREALAT 193
                 .|.||   .|.|.|:|. .::..||||.||.|.|.||.|||:.|..:||||::.||.||.
Zfish   130 -----DDCLS---GDRNDGKNSGNSQKRKKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREMLAM 186

  Fly   194 KLDLMEGRIAVWFQNRRAKWRKQEHTKKGPGRPAHNAH--------------PQ----------- 233
            |.:|.|.||.||||||||||||:|   |..||.:..|.              |:           
Zfish   187 KTELPEDRIQVWFQNRRAKWRKRE---KCWGRSSVMAEYGLYGAMVRHSIPLPESIINSAKSGMM 248

  Fly   234 -SCS----GDPIPLSELRARELAQRSKRMKKAIDRQAKKLQDKGLEVDYARLEAEYLAAHQENGV 293
             ||:    |:|..:.: ::.|:.:::....::........:.||.:.|..       .:...||.
Zfish   249 GSCAPWLLGEPAGMHK-KSMEIVKKAPGTPESTHSDTYSEEHKGKDSDTT-------WSSGANGA 305

  Fly   294 DENNWLDDDGYDDLHIDV 311
            |::        :|:.||:
Zfish   306 DDS--------EDMAIDL 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OdsHNP_523389.3 Homeodomain 159..215 CDD:459649 35/55 (64%)
vsx1NP_571408.1 Octapeptide motif 37..44
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..70 7/27 (26%)
COG5576 101..>221 CDD:227863 57/160 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..156 11/62 (18%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:11331779 147..151 0/3 (0%)
Homeodomain 152..208 CDD:459649 35/55 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 273..344 9/58 (16%)
Blue background indicates that the domain is not in the aligned region.

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