DRSC/TRiP Functional Genomics Resources

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Protein Alignment OdsH and sia3

DIOPT Version :10

Sequence 1:NP_523389.3 Gene:OdsH / 32758 FlyBaseID:FBgn0026058 Length:382 Species:Drosophila melanogaster
Sequence 2:XP_002942209.2 Gene:sia3 / 100490453 XenbaseID:XB-GENE-480406 Length:247 Species:Xenopus tropicalis


Alignment Length:207 Identity:53/207 - (25%)
Similarity:80/207 - (38%) Gaps:51/207 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 LSMDAPNPEISPNSVTNSSSVYMIR-QMALIQQARVAAAAVAMQQQ-QQQQRDLNRELGMDPHSE 111
            ||::...||.|...: :.::|..|| .:.|:..|:|   .|.:|.. ||...:|...||:    .
 Frog    15 LSLEEDYPEFSLPKM-DKANVNTIRGSIDLLPAAQV---QVPLQNTWQQTLLELYSVLGI----P 71

  Fly   112 QRIKLDSVSPTHNI------HAGSSRGIKQDPLSDEGADSNLGQNDCTES--------------- 155
            |.:|:...  .|.|      .:..|.|||..|..         ::.|.:.               
 Frog    72 QEVKVGRT--MHKIVRDDQSTSALSPGIKDKPSE---------RSSCLKRPLWEEEERVCKKMKS 125

  Fly   156 ---------SKKRRGRTNFNSWQLRELERVFQGSHYPDIFMREALATKLDLMEGRIAVWFQNRRA 211
                     |.:.|.||.:...|...|:..|..:.|||...|..:|....:.|.||.||||||||
 Frog   126 EPEDLLPTLSARSRKRTIYTKEQTDFLQNQFDINPYPDFVSRCHIAQLTGVPEPRIQVWFQNRRA 190

  Fly   212 KWRKQEHTKKGP 223
            :...:.|..:.|
 Frog   191 RHLSKIHRSQEP 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OdsHNP_523389.3 Homeodomain 159..215 CDD:459649 22/55 (40%)
sia3XP_002942209.2 COG5576 <123..236 CDD:227863 25/80 (31%)
Homeodomain 139..192 CDD:459649 22/52 (42%)

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