DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment unc-4 and rax

DIOPT Version :10

Sequence 1:NP_573242.2 Gene:unc-4 / 32757 FlyBaseID:FBgn0024184 Length:588 Species:Drosophila melanogaster
Sequence 2:XP_002936715.1 Gene:rax / 100038124 XenbaseID:XB-GENE-492665 Length:326 Species:Xenopus tropicalis


Alignment Length:200 Identity:61/200 - (30%)
Similarity:88/200 - (44%) Gaps:44/200 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 GVFGPNGPFLGRPRFDAASAGGHPNSAAAAAAATQMAAVNASNAFANLTGLSAAALRNVSAAQTT 190
            |.|..:|..|..|       ||:|         :::.::.|...|:....:..:....||.....
 Frog    12 GSFSLSGHLLRSP-------GGNP---------SRLHSIEAILGFSKEDSVLGSFQTEVSPRNAK 60

  Fly   191 AVAAVASTVATIQHRLMIGNRQSLPPAGPPSEGSNEDGGFPGDG--------------------- 234
            .|...:|     :|.|.....:..|......:|.::..|.|..|                     
 Frog    61 EVDKRSS-----RHCLHKMTEEIHPQQEHLEDGQSDGYGDPYSGKTSSECLSPGLSTSNNSDNKL 120

  Fly   235 --DDDSSAAKRRRSRTNFNSWQLEELERAFSASHYPDIFMREALAMRLDLKESRVAVWFQNRRAK 297
              |:.....|.||:||.|.::||.||||||..|||||::.||.|||:::|.|.||.|||||||||
 Frog   121 SDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAK 185

  Fly   298 VRKRE 302
            .|::|
 Frog   186 WRRQE 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
unc-4NP_573242.2 Homeodomain 244..300 CDD:459649 36/55 (65%)
raxXP_002936715.1 Homeodomain 132..188 CDD:459649 36/55 (65%)
OAR 299..315 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.