DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment raskol and Rasa4

DIOPT Version :9

Sequence 1:NP_001285388.1 Gene:raskol / 32754 FlyBaseID:FBgn0261570 Length:2016 Species:Drosophila melanogaster
Sequence 2:NP_598675.2 Gene:Rasa4 / 54153 MGIID:1858600 Length:802 Species:Mus musculus


Alignment Length:927 Identity:207/927 - (22%)
Similarity:342/927 - (36%) Gaps:219/927 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   543 KIRDLAIHMASASAIGA-DLSVTTENETTATADDDAGHHSDTSYEKACRRGSAPTTPILGSKQHQ 606
            |...|:|.:.....:.| |::.:::.......|::....:.|.::..|        |..| :.:|
Mouse     3 KRSSLSIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLC--------PFWG-EDYQ 58

  Fly   607 TEHNATSRFTNFFSKKSNPLKRTKSVTKLERTKRGSGGLRGSRSHESLLSSHAVMSTIDLSCTGA 671
            .....|.....|:....:.|.|...:.|:..|:             ..|:||....:   ..|..
Mouse    59 VHLPPTFHTVAFYVMDEDALSRDDVIGKVCLTR-------------DALASHPKGFS---GWTHL 107

  Fly   672 VGVAPVHQSVLGRRHCFQVRGGPRGERYYSCGSRQERDLWIYSLRKSIAPNAEHTRRTDNSLKMW 736
            |.|.| ::.|.|..|                            ||..:.|....:|     |:..
Mouse   108 VEVDP-NEEVQGEIH----------------------------LRLEVVPGVHASR-----LRCA 138

  Fly   737 VYEAKNLPPKKRYFCELQLDKTLY-GR---TSVKLQTDLLFWGEHFDFPDIPEINVITVNVFREV 797
            |.||::|.||.|........:..| ||   |||..::....|.|.|||               |:
Mouse   139 VLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDF---------------EL 188

  Fly   798 DKKKKR------------DKYQFVGSVKIPVHDVTSRLPCEQWYPILSDKAGDSLGRTSGGGGSG 850
            :|....            .:..|:|.|.:.|..:.|....|.|:.:..|::....|:    |..|
Mouse   189 EKGASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRLQPDQSKSRQGK----GNLG 249

  Fly   851 SKDKEQLPTLRIKCRFQSTDILPINVYGNFLTYLKENYK-------RVCETLEPVIGVKAKEDIG 908
            |        |:::.|.:...:||...|...:..|.:..|       |:...:|.....:.::::.
Mouse   250 S--------LQLEVRLRDETVLPSVCYQPLVQLLCQEVKLGTQGPGRLIPVIEETTSAECRQEVA 306

  Fly   909 QALVLLMHAQGLAGAFLTDVVALDLLRVGDQRLTFRGNSLATKSMEAFLKLTGEQYLQDTLSAPI 973
            ..|:.|...||||..||..:..|:|.|..:....||.||||:||||:|||:.|.:||...|...|
Mouse   307 TTLLKLFLGQGLAKDFLDLLFQLELGRTSEANTLFRSNSLASKSMESFLKVAGMRYLHGILGPII 371

  Fly   974 NELIQSERDCEVDPTKTSGSSAGS------------LQRQQAALRGAVRGAWQCIFESHKHFPAQ 1026
            :.:.:.::..|:||:|......|.            |::....||..:......|..|.:..||.
Mouse   372 DRVFEEKKYVELDPSKVEVKDVGCSGLHRPQTEAEVLEQSAQTLRAHLVALLSAICRSVRTCPAI 436

  Fly  1027 LRNCFATF-------RERLQQLGRQDMADNLISASIFLRFLCPAILSPSLFNITSELPSARATRN 1084
            :|   |||       |||......|::....:::.:.|||..||||||.||::......||.:|.
Mouse   437 IR---ATFRQLFRRVRERFPNAQHQNVPFIAVTSFLCLRFFSPAILSPKLFHLRERHADARTSRT 498

  Fly  1085 LTLVAKTLQTLANFTR--FQGKENFMEFLNDFLEQEAARMQQFLEIISTRPEHPAPDSILDWAGY 1147
            |.|:||.:|.:.|...  .:.||::||.|...:.|..|:::.|:.            .::|    
Mouse   499 LLLLAKAVQNIGNMDTPVSRAKESWMEPLQPTVRQGVAQLKDFIM------------KLVD---- 547

  Fly  1148 IDQGKQLSILHSLLSESLAKLPEARQHELDPLQHILDEISRAKEHG--MGTALPGGYLPATSSTH 1210
            |::.::|.:..:|.|::    |..::..|        .|.|.|..|  ..::....|...|:...
Mouse   548 IEEKEELDLQRALNSQA----PPVKEGPL--------FIHRTKGKGPLASSSFKKLYFSLTTEAL 600

  Fly  1211 SI------------------ASENQENRNPGSS-------GSHAGSNSEQLLPQQ--SQLAQPQH 1248
            |.                  |:|..|.::.|||       ....|......|..:  ::|.|...
Mouse   601 SFAKTSSSKKSTFIKLASIRAAEKVEEKSFGSSHIMQVIYADDVGRAQTVYLQCKCVNELNQWLS 665

  Fly  1249 AIVSKPLSAERGIMRGVLTPNSLEKNIFR--------YNDPTVNGLLQQQQQQQQQQQQQQQQH- 1304
            |: .|..:..||::|      |....|||        ..|.|..|..:...:...|:......| 
Mouse   666 AL-RKASTNNRGLLR------SYHPGIFRGDKWSCCHQKDKTDQGCDKTHSRVTLQEWNDPLDHD 723

  Fly  1305 ---QQLQQHGHQQQPHHQHPLQMLSNSQTSIAGNQYMSSPGGLQHAQSQTSMASSSLNGSSSNLL 1366
               |.:.:|....:...:...|:|..:  :.||    .||.|...| .:.|:|  .|.....:|.
Mouse   724 LEAQLIYRHLLGVEAALRERYQLLRGA--TEAG----VSPTGCDGA-PEDSLA--QLLRVLQDLR 779

  Fly  1367 HGHQQHAHHPQQLHPHH 1383
            ..|......|....|||
Mouse   780 EAHGSSLASPAAREPHH 796

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
raskolNP_001285388.1 PH_RasSynGAP-like 615..729 CDD:270082 19/113 (17%)
PH <656..720 CDD:278594 11/63 (17%)
C2_SynGAP_like 721..874 CDD:175980 38/168 (23%)
RasGAP 856..1185 CDD:214617 93/356 (26%)
RasGAP_DAB2IP 865..1192 CDD:213338 95/354 (27%)
Rasa4NP_598675.2 C2A_Rasal1_RasA4 6..126 CDD:176018 28/173 (16%)
C2 134..256 CDD:301316 35/153 (23%)
RasGAP 245..604 CDD:214617 103/401 (26%)
RasGAP_RASA4 264..549 CDD:213343 84/303 (28%)
PH_CAPRI 541..680 CDD:241523 30/173 (17%)
PH 566..671 CDD:278594 20/113 (18%)
BTK 680..708 CDD:279161 7/27 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834583
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.