DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment beta-Spec and actn4

DIOPT Version :9

Sequence 1:NP_001259660.1 Gene:beta-Spec / 32746 FlyBaseID:FBgn0250788 Length:2308 Species:Drosophila melanogaster
Sequence 2:XP_017951705.1 Gene:actn4 / 448522 XenbaseID:XB-GENE-494339 Length:926 Species:Xenopus tropicalis


Alignment Length:803 Identity:293/803 - (36%)
Similarity:427/803 - (53%) Gaps:89/803 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 ESVQKKTFTKWVNSHLCRVNCRIADLYVDMRDGKHLIKLLEVLSGERLPKPTKGKMRIHCLENVD 113
            |..|:||||.|.||||.:...:|.::..|.|||..|:.||||:||||||||.:||||:|.:.||:
 Frog    42 EKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVN 106

  Fly   114 KALQFLREQRVHLENIGSHDIVDGNASLNLGLIWTIILRFQIQDITIEEVDNKETKSAKDALLLW 178
            |||.|:..:.|.|.:||:.:|||||..:.||:||||||||.||||::||.      |||:.||||
 Frog   107 KALDFIASKGVKLVSIGAEEIVDGNTKMTLGMIWTIILRFAIQDISVEET------SAKEGLLLW 165

  Fly   179 CQMKTAGYHNVNVRNFTTSWRDGLAFNAIIHKHRPDLVQFEKLSKTNAIHNLNNAFDVAEDKLGL 243
            ||.|||.|.||||:||..||:|||||||:||:|||:|::::||.|.:.:.||||||:|||..|.:
 Frog   166 CQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPVTNLNNAFEVAERYLDI 230

  Fly   244 AKLLDAEDVF-VEHPDEKSIITYVVTYYHYFSKLKQETVQGKRIGKVVGIAMENDKMVHDYENFT 307
            .|:|||||:. ...||||:|:|||.::||.||..::......||.||:.:..||:.::.|||...
 Frog   231 PKMLDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYEKLA 295

  Fly   308 SDLLKWIETTIQSLGEREFENSLAGVQGQLAQFSNYRTIEKPPKFVEKGNLEVLLFTLQSKMRAN 372
            ||||:||..||..|..|..|.::..:|.:|..|.:||.:.||||..||..||:...|||:|:|.:
 Frog   296 SDLLEWIRRTIPWLENRVPEKTMHDMQQKLEDFRDYRRVHKPPKVQEKCQLEINFNTLQTKLRLS 360

  Fly   373 NQKPYTPKEGKMISDINKAWERLEKAEHERELALREELIRQEKLEQLAARFDRKASMRETWLSEN 437
            |:..:.|.||||:||||..|:.||:||...|..|...:.|.|:|:.||.:|.:||.:.|.|....
 Frog   361 NRPAFMPSEGKMVSDINNGWQHLEQAEKGFEEWLLNAIRRLERLDHLAEKFRQKALIHEAWTEGK 425

  Fly   438 QRLVSQDNF-GFDLAAVEAAAKKHEAIETDIFAYEERVQAVVAVCDELESERYHDVKRILLRKDN 501
            :.::.|.:: ...||.::|..:||||.|:|:.|:::||:.:.|:..||....|:|...:..|...
 Frog   426 EAMLKQKDYESATLADIKALIRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQK 490

  Fly   502 VMRLWTYLLELLRARRMRLEIS---------LQLQ----------------QNFQEMLYILDNME 541
            :...|..|..|...||..||::         |.|:                ::.|:| :|:..:|
 Frog   491 ICDQWDLLGSLTHTRREALEVTEKQLEAIDQLYLEYAKRAAPFNNWMEGAMEDLQDM-FIVHTIE 554

  Fly   542 EIKQLLMTDDYGKHLMGVEDLLQKHSLVEADINILGERVKVVVQNSQKFLSDDPESYKPCDPEII 606
            ||:.|:...:..|..:...|..:     ||.:.|..|..|:...:..|..|.:|  |....|:||
 Frog   555 EIEGLIAAHEQFKSTLPDADRER-----EAILGIQNEAQKIADYSHIKLASGNP--YTTVTPQII 612

  Fly   607 VS---RVQQLEDAYAELVRLAVERRSRLEESRKLWQFYWDTADEEN----WIKEKEQIVSTDEVG 664
            .|   :||||.......::...:::...|..|  .||    |...|    ||:.|     .:|:|
 Frog   613 NSKWEKVQQLVPKRDGALKGEHDKQQSNEHLR--LQF----ASLANVVGPWIQAK-----MEEIG 666

  Fly   665 HDLTTVNLMLSKHKALESEITSHDPQLQ--------NVAKVGS--ELITEG-HFGADRIKDRLKE 718
                  .:.:..|..||.::| |..|.:        |:.|:..  :||.|. .|........::.
 Frog   667 ------RIAIELHGTLEDQMT-HLKQYEQSVINYKPNIDKLEQQHQLIQEALIFDNKHTNYTMEH 724

  Fly   719 ILNKWDHLLDLTKYRRQRLENAVEYFQLFADADDVDNWMLDTLRIVSSEDVGRDEANV------- 776
            |...|:|||...    .|..|.||...|..||..:....:...| .|.....||....       
 Frog   725 IRVGWEHLLTTI----ARTSNEVENQILTRDAKGISQEQMHEYR-ASFNHFDRDHTGALGPEEFK 784

  Fly   777 QSLLKKHKDVADELKNYAEVIDA 799
            ..|:....||.::.:.....:||
 Frog   785 ACLISLGYDVENDRQKRIGALDA 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta-SpecNP_001259660.1 CH 51..149 CDD:278723 52/97 (54%)
CH 170..269 CDD:278723 61/99 (62%)
Spectrin 298..408 CDD:278843 49/109 (45%)
SPEC 422..521 CDD:197544 29/99 (29%)
SPEC 525..740 CDD:238103 56/248 (23%)
SPEC 639..846 CDD:238103 42/183 (23%)
SPEC 848..1058 CDD:238103
SPEC 955..1169 CDD:238103
SPEC 1170..1380 CDD:238103
SPEC 1386..1484 CDD:197544
SPEC 1488..1699 CDD:238103
SPEC 1594..1806 CDD:238103
SPEC 1807..2015 CDD:238103
Spectrin 2018..>2078 CDD:278843
PH 2167..2275 CDD:278594
PH_beta_spectrin 2167..2274 CDD:269975
actn4XP_017951705.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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