DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment beta-Spec and actn3b

DIOPT Version :9

Sequence 1:NP_001259660.1 Gene:beta-Spec / 32746 FlyBaseID:FBgn0250788 Length:2308 Species:Drosophila melanogaster
Sequence 2:NP_991107.2 Gene:actn3b / 323320 ZFINID:ZDB-GENE-030131-2040 Length:898 Species:Danio rerio


Alignment Length:857 Identity:294/857 - (34%)
Similarity:443/857 - (51%) Gaps:110/857 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 ESVQKKTFTKWVNSHLCRVNCRIADLYVDMRDGKHLIKLLEVLSGERLPKPTKGKMRIHCLENVD 113
            |..|:||||.|.||||.:...:|.::..|.|:|..|:.||||:||||||||.|||||.|.:.||:
Zfish    41 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDKGKMRFHKIANVN 105

  Fly   114 KALQFLREQRVHLENIGSHDIVDGNASLNLGLIWTIILRFQIQDITIEEVDNKETKSAKDALLLW 178
            |||.|:..:.|.|.:||:.:|||||..:.||:||||||||.||||::||.      |||:.||||
Zfish   106 KALDFICSKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEET------SAKEGLLLW 164

  Fly   179 CQMKTAGYHNVNVRNFTTSWRDGLAFNAIIHKHRPDLVQFEKLSKTNAIHNLNNAFDVAEDKLGL 243
            ||.|||.|.||||:||..||:||||..|:||:|||||:.:.||.|.:.|.|||.||:|||..|.:
Zfish   165 CQRKTAPYRNVNVQNFHISWKDGLALCALIHRHRPDLIDYSKLRKDDPIGNLNTAFEVAEKYLDI 229

  Fly   244 AKLLDAEDVF-VEHPDEKSIITYVVTYYHYFSKLKQETVQGKRIGKVVGIAMENDKMVHDYENFT 307
            .|:|||||:. ...||||:|:|||..:||.|:..:|......||.||:.:..||::::.:||...
Zfish   230 PKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYEKLA 294

  Fly   308 SDLLKWIETTIQSLGEREFENSLAGVQGQLAQFSNYRTIEKPPKFVEKGNLEVLLFTLQSKMRAN 372
            |:||:||..||..|..|..|.::..:|.:|..|.:||.:.|||:..||..||:...|||:|:|.:
Zfish   295 SELLEWIRRTIPWLENRAAEQTMRAMQQKLEDFRDYRRVHKPPRVQEKCQLEINFNTLQTKLRLS 359

  Fly   373 NQKPYTPKEGKMISDINKAWERLEKAEHERELALREELIRQEKLEQLAARFDRKASMRETWLSEN 437
            |:..:.|.||||:|||..||:.||:.|...|..|..|:.|.|:|:.||.:|.:|.|:.|:|.:..
Zfish   360 NRPAFMPSEGKMVSDIANAWKGLEQVEKGYEEWLLTEIRRLERLDHLAEKFKQKCSLHESWTTGK 424

  Fly   438 QRLVSQDNF-GFDLAAVEAAAKKHEAIETDIFAYEERVQAVVAVCDELESERYHDVKRILLRKDN 501
            :.|:||.:: ...|..:.|..:||||.|:|:.|:::||:.:.|:..||....|||...:..|...
Zfish   425 EHLLSQKDYETASLMEIRALMRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAATVNARCQG 489

  Fly   502 VMRLWTYLLELLRARRMRLEISLQLQQNFQEM------------------------LYILDNMEE 542
            :...|..|..|.:.||..||...:|.:...::                        ::|:.::||
Zfish   490 ICDQWDNLGTLTQKRRDSLERVEKLWETIDQLYLEFAKRAAPFNNWMDGAIEDLQDMFIVHSIEE 554

  Fly   543 IKQLLMTDDYGKHLMGVEDLLQKHSLVEAD------INILGERVKVVVQNSQKFLSDDPESYKPC 601
            |:.|:...|.           .|.:|.|||      :.|..|.||:......|.:..:|  |...
Zfish   555 IQSLITAHDQ-----------FKATLPEADKERMAVMGIQNEIVKIAQTYGIKLVGVNP--YSVL 606

  Fly   602 DPEIIVSR---VQQLEDAYAELVRLAVERRSRLEESRKLWQFYWDTADEEN----WIKEKEQIVS 659
            .|:.|.::   |:||.....::::..|.|:...|..|:.:      |.:.|    ||:.|     
Zfish   607 SPQDITNKWEAVKQLVPLRDQMLQEEVARQQANERLRRSF------AAQANIIGPWIQTK----- 660

  Fly   660 TDEVGHDLTTVNLMLSKHKALESEITSHDPQLQNVAKVGS---------ELITEG-HFGADRIKD 714
            .:|:||  .:|::..|    ||.::.:.....||:....|         :||.|. .|.......
Zfish   661 MEEIGH--VSVDIAGS----LEEQMNNLKQYEQNIINYKSNIDKLEGDHQLIQEALIFDNKHTNY 719

  Fly   715 RLKEILNKWDHLLDLTKYRRQRLENAV--------------EYFQLFADADDVDNWMLD-----T 760
            .::.|...|:.||.........:||.:              |:...|...|...|.|:|     .
Zfish   720 TMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQLNEFRASFNHFDRKRNGMMDPDDFRA 784

  Fly   761 LRIVSSEDVGRDE-ANVQSLLKKHKDVADELKNYAEVIDALHKQAESLKLNEAEKANVDKRLEAI 824
            ..|....|:|..| |.:.:|:..:.   ..:..:...||.:.:  |:.:.:.||:.....::.|.
Zfish   785 CLISMGYDLGEVEFARIMTLVDPNN---TGVVTFQAFIDFMTR--ETAETDTAEQVMASFKILAS 844

  Fly   825 DNRYKELTELAK 836
            |..|..:.||.:
Zfish   845 DKPYITVEELRR 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta-SpecNP_001259660.1 CH 51..149 CDD:278723 52/97 (54%)
CH 170..269 CDD:278723 60/99 (61%)
Spectrin 298..408 CDD:278843 45/109 (41%)
SPEC 422..521 CDD:197544 31/99 (31%)
SPEC 525..740 CDD:238103 52/261 (20%)
SPEC 639..846 CDD:238103 47/232 (20%)
SPEC 848..1058 CDD:238103
SPEC 955..1169 CDD:238103
SPEC 1170..1380 CDD:238103
SPEC 1386..1484 CDD:197544
SPEC 1488..1699 CDD:238103
SPEC 1594..1806 CDD:238103
SPEC 1807..2015 CDD:238103
Spectrin 2018..>2078 CDD:278843
PH 2167..2275 CDD:278594
PH_beta_spectrin 2167..2274 CDD:269975
actn3bNP_991107.2 SAC6 40..>404 CDD:227401 183/368 (50%)
SPEC 406..633 CDD:238103 59/239 (25%)
Spectrin 641..744 CDD:306853 24/119 (20%)
EFh_PEF 754..864 CDD:330173 22/108 (20%)
EFhand_Ca_insen 828..894 CDD:312305 7/29 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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