DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment beta-Spec and Actn

DIOPT Version :9

Sequence 1:NP_001259660.1 Gene:beta-Spec / 32746 FlyBaseID:FBgn0250788 Length:2308 Species:Drosophila melanogaster
Sequence 2:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster


Alignment Length:802 Identity:282/802 - (35%)
Similarity:421/802 - (52%) Gaps:98/802 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 EY-DGGNSSSRLFERSRIKALAEERESVQKKTFTKWVNSHLCRVNCRIADLYVDMRDGKHLIKLL 88
            || ||.......:||..:...|.|::  ||||||.|.||||.:....|.::..|.|:|..|:.||
  Fly    10 EYGDGYMEQEEEWEREGLLDPAWEKQ--QKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLL 72

  Fly    89 EVLSGERLPKPTKGKMRIHCLENVDKALQFLREQRVHLENIGSHDIVDGNASLNLGLIWTIILRF 153
            ||:|||.||||.:||||.|.:.||:|||.|:..:.|||.:||:.:|||||..:.||:||||||||
  Fly    73 EVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRF 137

  Fly   154 QIQDITIEEVDNKETKSAKDALLLWCQMKTAGYHNVNVRNFTTSWRDGLAFNAIIHKHRPDLVQF 218
            .||||::||:      :||:.||||||.|||.|.||||:||..|::|||||.|:||:|||||:.:
  Fly   138 AIQDISVEEM------TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDY 196

  Fly   219 EKLSKTNAIHNLNNAFDVAEDKLGLAKLLDAEDVF-VEHPDEKSIITYVVTYYHYFSKLKQ---- 278
            .||||.|.:.|||.||||||..|.:.::||.:|:. ...|||::|:|||..|||.|...:|    
  Fly   197 AKLSKDNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNV 261

  Fly   279 -------------------ETVQGKRIGKVVGIAMENDKMVHDYENFTSDLLKWIETTIQSLGER 324
                               ||. ..||.||:.:..||::::.:||...||||:||..|:..|..|
  Fly   262 THVPEPTRQYTYVPNNYNAETA-ANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSR 325

  Fly   325 EFENSLAGVQGQLAQFSNYRTIEKPPKFVEKGNLEVLLFTLQSKMRANNQKPYTPKEGKMISDIN 389
            :.:|||||||.:|.::..||...|||:..:|..||....|||:|:|.:|:..|.|.|||.:|||:
  Fly   326 QADNSLAGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDIS 390

  Fly   390 KAWERLEKAEHERELALREELIRQEKLEQLAARFDRKASMRETWL-SENQRLVSQDNFGFDLAAV 453
            .:|:.||.||...|..|..|.:|.|:||.||.:|..||...|.|. .:.:.|.|||.....|..:
  Fly   391 NSWKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNEL 455

  Fly   454 EAAAKKHEAIETDIFAYEERVQAVVAVCDELESERYHDVKRILLRKDNVMRLWTYLLELLRARRM 518
            :|..|||||.|:|:.|:::||:.:.|:..||.:..|||...:..|...:...|..|..|.:.||.
  Fly   456 KALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRT 520

  Fly   519 RLEISLQLQQNFQEM------------------------LYILDNMEEIKQLLMTDDYGKHLMGV 559
            .|:.:.::.:....:                        ::|:..||||:.|:...|..|..:|.
  Fly   521 ALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATLGE 585

  Fly   560 EDLLQKHSLVEADINILGERVKVV--------VQNSQKFLSDDPESYKPCDPEIIVSRVQQLEDA 616
            .|  ::.:|:   :|::.|...:|        ::|....|:.:..:.|..|...:|.:..|    
  Fly   586 AD--KEFNLI---VNLVREVESIVKQHQIPGGLENPYTTLTANDMTRKWSDVRQLVPQRDQ---- 641

  Fly   617 YAELVRLAVERRSRLEESRKLWQFYWDTADEEN----WIKEKEQIVSTDEVGHDLT-TVNLMLSK 676
                 .||.|.|.:........||    |::.|    ||:.:...|:.  :|..|. ::...|.:
  Fly   642 -----TLANELRKQQNNEMLRRQF----AEKANIVGPWIERQMDAVTA--IGMGLQGSLEDQLHR 695

  Fly   677 HKALESEITSHDPQLQNVAKVGSELITEGHFGADRIKDRLKEILN-KWDHLLDLTKYRRQRLENA 740
            .|..|..:.::.|.::.:.|: .:.:.|.....:|..:...|.|. .|:.||.........:||.
  Fly   696 LKEYEQAVYAYKPNIEELEKI-HQAVQESMIFENRYTNYTMETLRVGWEQLLTSINRNINEVENQ 759

  Fly   741 VEYFQLFADADDVDNWMLDTLR 762
            :    |..|:..:....|:..|
  Fly   760 I----LTRDSKGISQEQLNEFR 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta-SpecNP_001259660.1 CH 51..149 CDD:278723 52/97 (54%)
CH 170..269 CDD:278723 57/99 (58%)
Spectrin 298..408 CDD:278843 48/109 (44%)
SPEC 422..521 CDD:197544 33/99 (33%)
SPEC 525..740 CDD:238103 46/252 (18%)
SPEC 639..846 CDD:238103 27/130 (21%)
SPEC 848..1058 CDD:238103
SPEC 955..1169 CDD:238103
SPEC 1170..1380 CDD:238103
SPEC 1386..1484 CDD:197544
SPEC 1488..1699 CDD:238103
SPEC 1594..1806 CDD:238103
SPEC 1807..2015 CDD:238103
Spectrin 2018..>2078 CDD:278843
PH 2167..2275 CDD:278594
PH_beta_spectrin 2167..2274 CDD:269975
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063 56/105 (53%)
CH_ACTN_rpt2 139..252 CDD:409065 66/118 (56%)
SPEC 302..525 CDD:238103 89/222 (40%)
SPEC 420..647 CDD:238103 58/240 (24%)
SPEC 538..760 CDD:238103 47/242 (19%)
EFh 775..842 CDD:238008 1/3 (33%)
EFhand_Ca_insen 847..913 CDD:400872
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439900
Domainoid 1 1.000 106 1.000 Domainoid score I1672
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm47215
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11915
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.950

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