DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment beta-Spec and Actn

DIOPT Version :10

Sequence 1:NP_001259660.1 Gene:beta-Spec / 32746 FlyBaseID:FBgn0250788 Length:2308 Species:Drosophila melanogaster
Sequence 2:NP_477485.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster


Alignment Length:802 Identity:282/802 - (35%)
Similarity:421/802 - (52%) Gaps:98/802 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 EY-DGGNSSSRLFERSRIKALAEERESVQKKTFTKWVNSHLCRVNCRIADLYVDMRDGKHLIKLL 88
            || ||.......:||..:...|.|::  ||||||.|.||||.:....|.::..|.|:|..|:.||
  Fly    10 EYGDGYMEQEEEWEREGLLDPAWEKQ--QKKTFTAWCNSHLRKAGTAIDNIEEDFRNGLKLMLLL 72

  Fly    89 EVLSGERLPKPTKGKMRIHCLENVDKALQFLREQRVHLENIGSHDIVDGNASLNLGLIWTIILRF 153
            ||:|||.||||.:||||.|.:.||:|||.|:..:.|||.:||:.:|||||..:.||:||||||||
  Fly    73 EVISGETLPKPDRGKMRFHKIANVNKALDFIASKGVHLVSIGAEEIVDGNLKMTLGMIWTIILRF 137

  Fly   154 QIQDITIEEVDNKETKSAKDALLLWCQMKTAGYHNVNVRNFTTSWRDGLAFNAIIHKHRPDLVQF 218
            .||||::||:      :||:.||||||.|||.|.||||:||..|::|||||.|:||:|||||:.:
  Fly   138 AIQDISVEEM------TAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDY 196

  Fly   219 EKLSKTNAIHNLNNAFDVAEDKLGLAKLLDAEDVF-VEHPDEKSIITYVVTYYHYFSKLKQ---- 278
            .||||.|.:.|||.||||||..|.:.::||.:|:. ...|||::|:|||..|||.|...:|    
  Fly   197 AKLSKDNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNV 261

  Fly   279 -------------------ETVQGKRIGKVVGIAMENDKMVHDYENFTSDLLKWIETTIQSLGER 324
                               ||. ..||.||:.:..||::::.:||...||||:||..|:..|..|
  Fly   262 THVPEPTRQYTYVPNNYNAETA-ANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSR 325

  Fly   325 EFENSLAGVQGQLAQFSNYRTIEKPPKFVEKGNLEVLLFTLQSKMRANNQKPYTPKEGKMISDIN 389
            :.:|||||||.:|.::..||...|||:..:|..||....|||:|:|.:|:..|.|.|||.:|||:
  Fly   326 QADNSLAGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSDIS 390

  Fly   390 KAWERLEKAEHERELALREELIRQEKLEQLAARFDRKASMRETWL-SENQRLVSQDNFGFDLAAV 453
            .:|:.||.||...|..|..|.:|.|:||.||.:|..||...|.|. .:.:.|.|||.....|..:
  Fly   391 NSWKGLELAEKAFEEWLLAETMRLERLEHLAQKFKHKADAHEDWTRGKEEMLQSQDFRQCKLNEL 455

  Fly   454 EAAAKKHEAIETDIFAYEERVQAVVAVCDELESERYHDVKRILLRKDNVMRLWTYLLELLRARRM 518
            :|..|||||.|:|:.|:::||:.:.|:..||.:..|||...:..|...:...|..|..|.:.||.
  Fly   456 KALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRT 520

  Fly   519 RLEISLQLQQNFQEM------------------------LYILDNMEEIKQLLMTDDYGKHLMGV 559
            .|:.:.::.:....:                        ::|:..||||:.|:...|..|..:|.
  Fly   521 ALDEAERILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATLGE 585

  Fly   560 EDLLQKHSLVEADINILGERVKVV--------VQNSQKFLSDDPESYKPCDPEIIVSRVQQLEDA 616
            .|  ::.:|:   :|::.|...:|        ::|....|:.:..:.|..|...:|.:..|    
  Fly   586 AD--KEFNLI---VNLVREVESIVKQHQIPGGLENPYTTLTANDMTRKWSDVRQLVPQRDQ---- 641

  Fly   617 YAELVRLAVERRSRLEESRKLWQFYWDTADEEN----WIKEKEQIVSTDEVGHDLT-TVNLMLSK 676
                 .||.|.|.:........||    |::.|    ||:.:...|:.  :|..|. ::...|.:
  Fly   642 -----TLANELRKQQNNEMLRRQF----AEKANIVGPWIERQMDAVTA--IGMGLQGSLEDQLHR 695

  Fly   677 HKALESEITSHDPQLQNVAKVGSELITEGHFGADRIKDRLKEILN-KWDHLLDLTKYRRQRLENA 740
            .|..|..:.::.|.::.:.|: .:.:.|.....:|..:...|.|. .|:.||.........:||.
  Fly   696 LKEYEQAVYAYKPNIEELEKI-HQAVQESMIFENRYTNYTMETLRVGWEQLLTSINRNINEVENQ 759

  Fly   741 VEYFQLFADADDVDNWMLDTLR 762
            :    |..|:..:....|:..|
  Fly   760 I----LTRDSKGISQEQLNEFR 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta-SpecNP_001259660.1 CH_SPTB-like_rpt1 36..152 CDD:409095 59/115 (51%)
CH_SPTB_like_rpt2 169..273 CDD:409097 60/104 (58%)
Spectrin 298..408 CDD:395348 48/109 (44%)
SPEC 422..521 CDD:197544 33/99 (33%)
SPEC 525..740 CDD:238103 46/252 (18%)
SPEC 639..846 CDD:238103 27/130 (21%)
SPEC 848..1058 CDD:238103
SPEC 955..1169 CDD:238103
SPEC 1170..1380 CDD:238103
SPEC 1386..1484 CDD:197544
SPEC 1488..1699 CDD:238103
SPEC 1594..1806 CDD:238103
SPEC 1807..2015 CDD:238103
Spectrin 2018..>2078 CDD:395348
PH_beta_spectrin 2167..2274 CDD:269975
ActnNP_477485.1 CH_ACTN_rpt1 31..135 CDD:409063 56/105 (53%)
CH_ACTN_rpt2 139..252 CDD:409065 66/118 (56%)
SPEC 302..525 CDD:238103 89/222 (40%)
SPEC 420..647 CDD:238103 58/240 (24%)
SPEC 538..760 CDD:238103 47/242 (19%)
EFh 775..842 CDD:238008 1/3 (33%)
EFhand_Ca_insen 847..913 CDD:430177
Blue background indicates that the domain is not in the aligned region.

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