DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment beta-Spec and Clmn

DIOPT Version :9

Sequence 1:NP_001259660.1 Gene:beta-Spec / 32746 FlyBaseID:FBgn0250788 Length:2308 Species:Drosophila melanogaster
Sequence 2:XP_017449593.1 Gene:Clmn / 299285 RGDID:1306741 Length:1107 Species:Rattus norvegicus


Alignment Length:1236 Identity:271/1236 - (21%)
Similarity:422/1236 - (34%) Gaps:451/1236 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 ERESVQKKTFTKWVNSHL--CRVNCRIADLYVDMRDGKHLIKLLEVLSGERLPKPTKGKM-RIHC 108
            |||:|||:|||:|:|.||  |.....:.||:||::|||.|:.|||||||..|....|... ||..
  Rat    84 ERENVQKRTFTRWINLHLEKCDPPLEVTDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFR 148

  Fly   109 LENVDKALQFLREQRVHLENIGSHDIVDGNASLNLGLIWTIILRFQIQDIT-------------- 159
            |.|:.|||:||.:..|.|.:|.:.:|.|||.||.|||||.|||.|||:::|              
  Rat   149 LNNIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQIKELTGNLSRSSPSSSLSP 213

  Fly   160 -------------------IEEVDNKETKSAKDALLLWCQMKTAGYHNVNVRNFTTSWRDGLAFN 205
                               ...|..|:.:.|...||.|.|.||..| .|.|::|..|||.||||.
  Rat   214 GSGGTDSDSSYPPTPTTERSVAVAVKDQRKAIKTLLSWVQRKTRKY-GVAVQDFAGSWRSGLAFL 277

  Fly   206 AIIHKHRPDLVQFEKLSKTNAIHNLNNAFDVAEDKLGLAKLLDAEDVFVEHPDEKSIITYVVTYY 270
            |:|....|.||..::..:.:...||..||.:|.|.|.:.:||:.||:.|:.|||:||:|||..:.
  Rat   278 AVIKAIDPSLVDMKQALEDSTRENLEKAFRIAHDSLHIPRLLEPEDIMVDMPDEQSIVTYVAQFL 342

  Fly   271 HYFSKLKQETVQGKRIGKVVGIAMENDKMVHDYENFTSDLLKWIETTI----QSLGEREFENSLA 331
            ..|.:|..|                      |:.|  .|....||:|.    :|..|:|....|.
  Rat   343 ERFPELDPE----------------------DFVN--PDKEAPIESTFVRIKESPSEQESRVLLL 383

  Fly   332 GVQGQLAQFSNYRTIEKPPKFV----------------------------------------EKG 356
            ...|:.....::.|...||..|                                        ..|
  Rat   384 SQNGEQPYTVSHETSHPPPDKVFVCDQLESPTGFSLGSAPSHKLPDSPTDFMHQIIDQVFQASMG 448

  Fly   357 NLE---------VLLFTLQSKMRAN--------------------NQKPYTPKEGKMISDINKAW 392
            |.|         .:|.|.:...|:|                    ::.|:...|.: .....||.
  Rat   449 NTESTTEPTPESSILSTRKDGRRSNSLPVKKSVHFETDLHKDASCSKDPFYSSEFR-FEGSPKAT 512

  Fly   393 ERLEKAEHERELALREELIRQEKLEQLAARFDRKASMRETWLSENQRLVSQDNFGFDLAAVEAAA 457
            :.|.|.:....||   |:.:::|.||.|                  |||        |.|....|
  Rat   513 KELSKQDGHASLA---EVSKEKKPEQEA------------------RLV--------LEAASDKA 548

  Fly   458 KKHEAIETDIFAYEERVQAVVAVCD-ELE-------------SERYHDVKRILLRKDNVMRLWTY 508
            .:...::||..:.:.::....:.|: .:|             |.|           ||.      
  Rat   549 PEDTIVDTDAMSQDAQLPQDSSFCNGNVENPASLGEKGPSPPSPR-----------DNT------ 596

  Fly   509 LLELLRARRMRLEISLQLQQNFQEMLYILDNMEEIKQLLMT------DDYGKHLMGVEDLLQKHS 567
                                       ||.|..|:|..|:|      |||      .|.:..|.|
  Rat   597 ---------------------------ILANSVELKVPLLTVEPMDKDDY------FECIPLKAS 628

  Fly   568 LVEADINILGERVKVVVQNSQKFLSDDPESYKPCDPEIIVSRVQQLEDAYAELVRLAVERRSRLE 632
            ....|:       ......||.|: :||.|:|....|         |:..........:|:|:..
  Rat   629 KFNRDL-------VDFASTSQAFV-EDPSSHKKTPGE---------EEGSENYTEKPGKRKSKSP 676

  Fly   633 ESRKLWQFYWDTADEENWIKEKEQIVSTDEVGHDLTTVNLMLSKHKALESEITSHDPQLQNVAKV 697
            .:                  |.|   ||:             |:.:.::.|....||:.::    
  Rat   677 HA------------------ETE---STE-------------SRLEPIKLETPPKDPEQED---- 703

  Fly   698 GSELITEGH-FGADRIKDRLKEILNKWDHLLDLTKYRRQRLENAVEYFQLFADADDVDNWM---- 757
                  :|| ...:...|:..|:..|        ..|:....::.|..:.......|...|    
  Rat   704 ------QGHTLPPETAADKKPEVYEK--------AKRKSTRHHSEEEGEAEGGLSAVGGEMPSNP 754

  Fly   758 ------LDTLRIVSSEDVGRD-----------------------EANVQSLLKKHKDVADELKNY 793
                  |:|||..|.|  |.|                       |..:.::|:.:.:..::||  
  Rat   755 PSTSVSLETLRSHSEE--GLDFKPSPPLSKISVIPHDLFYYPHYEVPLAAVLEAYAEGGEDLK-- 815

  Fly   794 AEVIDALHKQAESLKLNEAEKANVDKRLE-------------AIDNRYKELTELAKLRKQRLLDA 845
            :|..|..|.....|:.:..|:...|:..|             .:||.|..:.:            
  Rat   816 SEDADLEHPDGSYLQDSREEEEEEDEEEEEAHSSHSSCNFSLPVDNSYPRVND------------ 868

  Fly   846 LSLYKLMSEADGVEQWIKEKTKMLDTMTPGK--DIEDVEIMKHRFEGFDKEMNANASRVAVVNQL 908
                 .:|..||..:.....::      ||.  ..||.:.|:.:..|   .:.:..|:.....:|
  Rat   869 -----HVSHVDGSSEGPTSASE------PGSPPSHEDHQPMETKENG---PVESQQSQEPPTPEL 919

  Fly   909 ARQLLH---VEHPNSDEILERQNHLNQEWSTL--REKAEAKMDDL-----------KSAHGVQTF 957
            :.:.|.   .|.|.|.:..|::.|::...|:|  ........|||           :::|...:.
  Rat   920 STKPLEEKLTEVPTSSKKKEKRKHMDHVESSLFIAPGTVRSSDDLEENPCEHKVPSRNSHSDSSI 984

  Fly   958 YIECRETISWIEDKKRILTETDSLEMDLTGVMTLQRRLSGMDRDLAAIQAKLSSLEREANSIEDE 1022
            ||. |.|             ..|||:|....:.|        |:.|.:..:.:.|....||    
  Rat   985 YIR-RHT-------------NRSLELDHFSYVQL--------RNAADVDDRRNRLLNRYNS---- 1023

  Fly  1023 HPEEAKIIRERIAQIELIWEQLTQMLKERDSKLEEAGDLHRFLRDLDHFQTWLTKTQTDVASEDT 1087
                               ::||:::      |:..|......|:..|  |.|:.|.|:.:.|..
  Rat  1024 -------------------QKLTELI------LQFYGIRADMKREYKH--TRLSMTGTNSSGEAV 1061

  Fly  1088 P 1088
            |
  Rat  1062 P 1062

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta-SpecNP_001259660.1 CH 51..149 CDD:278723 51/100 (51%)
CH 170..269 CDD:278723 43/98 (44%)
Spectrin 298..408 CDD:278843 30/182 (16%)
SPEC 422..521 CDD:197544 14/112 (13%)
SPEC 525..740 CDD:238103 39/221 (18%)
SPEC 639..846 CDD:238103 39/253 (15%)
SPEC 848..1058 CDD:238103 40/227 (18%)
SPEC 955..1169 CDD:238103 26/134 (19%)
SPEC 1170..1380 CDD:238103
SPEC 1386..1484 CDD:197544
SPEC 1488..1699 CDD:238103
SPEC 1594..1806 CDD:238103
SPEC 1807..2015 CDD:238103
Spectrin 2018..>2078 CDD:278843
PH 2167..2275 CDD:278594
PH_beta_spectrin 2167..2274 CDD:269975
ClmnXP_017449593.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D543832at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.