DRSC/TRiP Functional Genomics Resources

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Protein Alignment beta-Spec and Dmd

DIOPT Version :9

Sequence 1:NP_001259660.1 Gene:beta-Spec / 32746 FlyBaseID:FBgn0250788 Length:2308 Species:Drosophila melanogaster
Sequence 2:XP_006527830.1 Gene:Dmd / 13405 MGIID:94909 Length:3696 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
beta-SpecNP_001259660.1 CH 51..149 CDD:278723
CH 170..269 CDD:278723
Spectrin 298..408 CDD:278843
SPEC 422..521 CDD:197544
SPEC 525..740 CDD:238103
SPEC 639..846 CDD:238103
SPEC 848..1058 CDD:238103
SPEC 955..1169 CDD:238103
SPEC 1170..1380 CDD:238103
SPEC 1386..1484 CDD:197544
SPEC 1488..1699 CDD:238103
SPEC 1594..1806 CDD:238103
SPEC 1807..2015 CDD:238103
Spectrin 2018..>2078 CDD:278843
PH 2167..2275 CDD:278594
PH_beta_spectrin 2167..2274 CDD:269975
DmdXP_006527830.1 SAC6 12..>232 CDD:227401
SPEC 346..560 CDD:238103
SPEC 562..829 CDD:351773
SPEC 729..935 CDD:238103
SPEC 945..1154 CDD:238103
SPEC 1051..1265 CDD:238103
SMC_prok_B 1128..>1938 CDD:274008
SPEC 2107..2317 CDD:238103
SPEC 2465..2681 CDD:238103
SPEC 2683..2926 CDD:238103
Spectrin 2927..3032 CDD:334073
WW 3052..3081 CDD:238122
EFh_DMD 3118..3279 CDD:320004
EF-hand-like motif 3118..3156 CDD:320004
EF-hand-like motif 3164..3198 CDD:320004
EF-hand-like motif 3204..3240 CDD:320004
EF-hand-like motif 3253..3279 CDD:320004
ZZ_dystrophin 3304..3352 CDD:239074
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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