DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5800 and HCA4

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_012501.1 Gene:HCA4 / 853419 SGDID:S000003570 Length:770 Species:Saccharomyces cerevisiae


Alignment Length:848 Identity:330/848 - (38%)
Similarity:463/848 - (54%) Gaps:152/848 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 KSRLAATEAE---------IQDLKTKYAEID--ATAIKKFAQFPLSKKTQKALAESKFVHPTQVQ 99
            |:||..|:.:         |::||||..|.|  .|..|.|...|:|..|.|.|.||.|:..|::|
Yeast     4 KNRLNTTQRKTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQ 68

  Fly   100 RDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIISPTRELAYQIFETL 164
            .|||..:|||.|||.||.||||||||||:||:|.|:..||:..||:||:|||||||||.||:|.|
Yeast    69 ADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVL 133

  Fly   165 KKVGKHHDFSAGLIIGGKNLKFERTRMDQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADR 229
            .|:|.|..|||||:||||::|||..|:.:.||||.||||:|||:|:....|||.::|||||||||
Yeast   134 TKIGSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADR 198

  Fly   230 CLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKK 294
            ||||||:|||::|:....|.||||||||||:.:|.|||||:|.|...||     ..:....|..|
Yeast   199 CLDMGFKKTLDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVG-----THDVMDGSVNK 258

  Fly   295 TPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGS 359
            ..:|     ||.|||.|:.:.|.||:.:|:||||:|||.|:|||::|.||..::||.|.|::||.
Yeast   259 EAST-----PETLQQFYIEVPLADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGI 318

  Fly   360 PLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGR 424
            .|:.|:|...|..|....:.|.|...|.:|:|||.:||:|||||:||||:||||||..||||.||
Yeast   319 SLMHLHGRQKQRARTETLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGR 383

  Fly   425 SARNKTRGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDPKKL-------FSPRVKIEAFLAQF 482
            .||...:|:.|::|||.|:|..:..|..:        :|:|.||       .|.:.::::.|.:.
Yeast   384 CARYGKKGKSLIMLTPQEQEAFLKRLNAR--------KIEPGKLNIKQSKKKSIKPQLQSLLFKD 440

  Fly   483 PELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVPFLEKFLWRQKQLQQQ 547
            |||:...|:||:||::|:::.::|::|....|..:.||.||||...|::.     :...|.::|.
Yeast   441 PELKYLGQKAFISYVRSIYVQKDKQVFKFDELPTEEFAYSLGLPGAPKIK-----MKGMKTIEQA 500

  Fly   548 KEQGDNA-------------------KSINP--------------LLSK----LTKQQSFGGGDE 575
            ||: .||                   ||..|              :||:    :||.|:    .|
Yeast   501 KER-KNAPRQLAFLSKANEDGEVIEDKSKQPRTKYDKMFERKNQTILSEHYLNITKAQA----QE 560

  Fly   576 DEENSDDEDFIKVKRKDHDVEGEPVKLDEEDDTENEAEAPLVVPKREKLVTKASLAKKALKKNLQ 640
            ||    |:|||.||||||::              ||||.|.:.....:...|.:|:|||...:..
Yeast   561 DE----DDDFISVKRKDHEI--------------NEAELPALTLPTSRRAQKKALSKKASLASKG 607

  Fly   641 VNSKLKFDDEGET-----MADDRSQMKALSAR-QRTVNQDDDDGGINLVLSKALLTEEDQYDKQR 699
            ..|||.||||||.     :.|:....|...|. |:|.         .|....|::.:.|..|||.
Yeast   608 NASKLIFDDEGEAHPVYELEDEEEFHKRGDAEVQKTE---------FLTKESAVMADIDNIDKQV 663

  Fly   700 FRELVKKRHKLQREKLRKKAE---EAKGSDDEEEQQ-----DDDNADDAGSESDHSVDLSWLPDP 756
            .:|..:::.:.:.|.:|::.|   |.:.|.||||.:     ...|..|..|:.|       :||.
Yeast   664 AKEKKQEKKRKRLEAMRREMEAAMEEEISGDEEEGKTVAYLGTGNLSDDMSDGD-------MPDS 721

  Fly   757 DKVYKNKPNASDRNESKSESSDASDDEKADDSDGDDDDVSDDEPAYKKSKLTNKMTLMDTEAIAA 821
            :...|.|....|.:...:.|:..           |||.:..:||          .||.|.|::.|
Yeast   722 EGHLKKKARTVDYSHGHNPSNSV-----------DDDIIEVEEP----------QTLEDLESLTA 765

  Fly   822 SLL 824
            .|:
Yeast   766 KLI 768

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 221/442 (50%)
DEADc 74..277 CDD:238167 124/202 (61%)
HELICc 311..437 CDD:238034 64/125 (51%)
DUF4217 474..530 CDD:290667 19/55 (35%)
HCA4NP_012501.1 SrmB 18..536 CDD:223587 247/541 (46%)
DEADc_DDX10 52..249 CDD:350699 123/201 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343126
Domainoid 1 1.000 223 1.000 Domainoid score I443
eggNOG 1 0.900 - - E2759_KOG0343
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 492 1.000 Inparanoid score I215
Isobase 1 0.950 - 0 Normalized mean entropy S1985
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005116
OrthoInspector 1 1.000 - - oto99644
orthoMCL 1 0.900 - - OOG6_102138
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R291
SonicParanoid 1 1.000 - - X3635
TreeFam 1 0.960 - -
1413.730

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