DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5800 and ddx1

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001184253.1 Gene:ddx1 / 556790 ZFINID:ZDB-GENE-041001-215 Length:740 Species:Danio rerio


Alignment Length:774 Identity:146/774 - (18%)
Similarity:231/774 - (29%) Gaps:354/774 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 FAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLF--- 135
            |.:..:..:..:|:.|..::.||.:|.:||...|.|.|||.||.||||||.||.|||::.::   
Zfish     4 FGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETI 68

  Fly   136 -------------------MNKWS------------------------------RT--------- 142
                               .:||.                              ||         
Zfish    69 KDLQEGKKGRSAVKTGGAVFSKWQMNPFDRSTAFAIGSDGLCCQSREFKEWHGCRTTKAVTKGRY 133

  Fly   143 --------------------------------------------------------DGVG----- 146
                                                                    |.:|     
Zfish   134 YYEVACHDQGLCRVGWSTAQASLDLGTDKYGFGFGGTGKKSHNKQFDSYGEEFTMHDTIGCYIDL 198

  Fly   147 ----------------------------------------------------------------- 146
                                                                             
Zfish   199 EKGHVSFSKNGNDLGLAFEIPQQLRSQPFFASCVLKNAELKFNFGDEAFKHQPKDGYVALNQAPE 263

  Fly   147 -------------------------AIIISPTRELAYQIFETLKKVGKHHD---FSAGLIIGGKN 183
                                     |:||.|::|||.|....:.:..|:.|   ....|||||..
Zfish   264 GHVVKSSQTGSAKVTQVKSSSNAPRALIIEPSKELAEQTLNNVNQFKKYVDNPKLRELLIIGGVA 328

  Fly   184 LKFERTRMDQCNIL-------ICTPGRLLQHMDENPLFNTSTMEM-----LVLDEADRCLDMGFQ 236
            .|      :|.|:|       :.|||||      :.|.:|..:::     |||||.|..|..|..
Zfish   329 AK------EQLNVLESGVDIVVGTPGRL------DDLISTGKLDLSQVRFLVLDECDGLLSAGNT 381

  Fly   237 KTLNSIIENFPPVR------QTLLFSAT-QTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKK 294
            ..:..|....|.|.      |.::.||| .:..|:.|:...:..|.:|...|..           
Zfish   382 DFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED----------- 435

  Fly   295 TPNTAVLAVPELLQQSYVVLNLEDKITMLWSFI-KNHLKQ-----------------------KI 335
                   :|||.:.  :||:.:..|...||..: |||::.                       ||
Zfish   436 -------SVPETVH--HVVVTVNPKNDKLWERLGKNHIRTDEVHAKDDTRPGANSPEMWSEAIKI 491

  Fly   336 I---VFVASCKQAKYLYE-IFCKLR-------------PGSP--------LLALYGTLHQDRRIA 375
            :   ..|.:.|:.|.... |||:.:             .|.|        .:.|:|....:.|..
Zfish   492 LKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIKQGGGPDKKGHQFSCVCLHGDRKPNERKY 556

  Fly   376 IYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTP 440
            ..|.|.::....:..||||:||:|...|.:|:.:..|::...|:||.||..|....|..:.::..
Zfish   557 NLERFKKQEVKFLICTDVAARGIDVRGVPYVINVTLPDEKENYVHRIGRVGRADRMGLAISLVAM 621

  Fly   441 SEEE--YMISA----------LKE-----------QLNIDI----RC--VQIDPKKLFSPRVKIE 476
            .:|:  |.:.|          |||           :|..||    :|  .|.:|    ..:|.::
Zfish   622 EKEKVWYHVCASRGKGCYNTRLKENGGCTIWYNEKELLSDIEEHLKCTITQCEP----DIKVPVD 682

  Fly   477 AF--LAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVPF 533
            .|  ...:.:.|||....:..:: .:.....:.|.|   |:.:|....|.|...|...|
Zfish   683 EFDGKVTYGQRRATGGGLYKGHV-DILAPTVQELAN---LEREAQTSFLHLGYLPNQLF 737

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 133/708 (19%)
DEADc 74..277 CDD:238167 76/436 (17%)
HELICc 311..437 CDD:238034 40/174 (23%)
DUF4217 474..530 CDD:290667 10/57 (18%)
ddx1NP_001184253.1 SrmB 1..>62 CDD:223587 26/57 (46%)
P-loop_NTPase 4..>70 CDD:304359 26/65 (40%)
SPRY_DDX1 93..245 CDD:293933 4/151 (3%)
DEXDc 238..439 CDD:214692 47/230 (20%)
P-loop_NTPase 266..426 CDD:304359 43/171 (25%)
Helicase_C 493..609 CDD:278689 28/115 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.