DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5800 and ddx24

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:XP_003200454.2 Gene:ddx24 / 553462 ZFINID:ZDB-GENE-100716-4 Length:803 Species:Danio rerio


Alignment Length:668 Identity:165/668 - (24%)
Similarity:265/668 - (39%) Gaps:173/668 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RKSGDNSQKRPRQEINKSRLAATEAE----IQDLKTKY---AEIDATA---IKKFAQFPLSKKTQ 84
            :|..:..|::|.:|  :|..|..|||    ....|:::   |.::|..   :..:....:.:...
Zfish   155 KKKQEEDQEQPEEE--RSAAAGAEAESAVSAAPQKSRHWSRASLEAPGPADVSSWRDLLVPEPVL 217

  Fly    85 KALAESKFVHPTQVQRDSIGPALQGK-DVLGAAITGSGKTLAFLIPVLEHLFMNKW--------- 139
            :|||...|..||.:|...:.||::.: |:||||.|||||||.|.||:: |:.: :|         
Zfish   218 RALAVLGFSAPTAIQALVLPPAIRDRLDILGAAETGSGKTLCFGIPMI-HMIL-QWREQTEEHST 280

  Fly   140 -SRT---------------------------------------DGVGA----------------- 147
             .||                                       :|..|                 
Zfish   281 PERTHTPAQSLYLQEEHGEDDDDDDDDDEKKDDEVIDDDEGGAEGCSAPPDDPDGQNDPDPASGV 345

  Fly   148 ------IIISPTRELAYQIFETLKKVGKHHDFSAGLIIGG-KNLKFERTRMDQCNILICTPGRLL 205
                  ::::||||||.|:...:..|.:.......:::|| ...|..|..|.:..|:|.|||||.
Zfish   346 CRPLLGLVLTPTRELAVQVKHHIDAVAQFTGIKTAIVVGGMAPQKQHRVLMRRPEIIIATPGRLW 410

  Fly   206 QHM-DENP-LFNTSTMEMLVLDEADRCLDMGFQKTLNSIIE-----NFPPVRQTLLFSATQTNTV 263
            :.: :::| |.:...:..||||||||.::.|....|.|::|     .|...|||.:||||.|...
Zfish   411 EMIREKHPHLQDLRQLRCLVLDEADRMVEKGHFAELESLLELLNTSQFSSRRQTFVFSATLTLVH 475

  Fly   264 QDLARLNLKDPVYVGYGGATPREEPS--------ASTKKTPN----TAVLAVPELLQQSYVVLNL 316
            ...:||..|..      ...|.|:.|        ...:..|.    |...|..|.|.::.:....
Zfish   476 SLPSRLQQKKK------KQRPAEQRSKLQLLMEKVGVRDKPKVIDLTRKQATVETLTETRISCTK 534

  Fly   317 EDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFL 381
            |||...|:.|:. ....:.:||..|....|.||.:. .|...:||: |:..:||.:|:...|.|.
Zfish   535 EDKDLFLYYFLL-QFPGRSMVFANSIACIKRLYALL-HLLDCTPLM-LHANMHQKQRLKNLERFA 596

  Fly   382 RKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYM 446
            ..:..|:.:||||:||||.|.|..|:....|.....|:||:||:||....|..||:::|.     
Zfish   597 ENTRCVLLTTDVAARGLDIPDVQHVIHYQVPRTSETYVHRSGRTARATREGLSLLLISPD----- 656

  Fly   447 ISALKEQLNIDIRCVQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNV 511
                 :.||....|..:|..:      ::..|..:...:.|..:|..|::               
Zfish   657 -----DLLNYRRICRTLDKSE------ELPVFPVESKCMAAVKERVDLAH--------------- 695

  Fly   512 FSLDLDAFAQSLGLAVTPRVPFLEKFLWRQKQLQQQKEQGDNAKSI---NPLLSKLTKQQSFGGG 573
                              |:..:|.|..||.|......|...|..|   :.||...:|     |.
Zfish   696 ------------------RIEKMEYFHSRQTQHNSWVRQAAEAMDIDVDDELLMGSSK-----GE 737

  Fly   574 DEDEENSDDEDFIKVKRK 591
            ||:.|...::..::.:.|
Zfish   738 DEEREQQREKQMLRKQLK 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 144/543 (27%)
DEADc 74..277 CDD:238167 76/283 (27%)
HELICc 311..437 CDD:238034 42/125 (34%)
DUF4217 474..530 CDD:290667 4/55 (7%)
ddx24XP_003200454.2 PTZ00424 204..676 CDD:185609 132/498 (27%)
P-loop_NTPase 207..472 CDD:304359 72/266 (27%)
Helicase_C 535..643 CDD:278689 39/110 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.