DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5800 and ddx18

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001016776.1 Gene:ddx18 / 549530 XenbaseID:XB-GENE-6085268 Length:640 Species:Xenopus tropicalis


Alignment Length:577 Identity:205/577 - (35%)
Similarity:311/577 - (53%) Gaps:56/577 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RKSGDNSQKRPRQEINKSRLAATEAEIQDLK------TKYAE------------------IDATA 70
            :|...|:.|....:..|::..|.|...|:.|      ||..|                  .:.||
 Frog    82 KKKRKNAAKAEGADAKKAKQEAPEGSDQESKCENHVETKAEEEAEEEEDGPTLPMGLTGAFEDTA 146

  Fly    71 IKKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLF 135
            ....|: .:::.|.:|:.|..|.|.|::|..:|.|.|:|:|||.||.||||||||||||.:|.::
 Frog   147 FSSLAE-SVNENTLRAVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAIELVY 210

  Fly   136 MNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRM-DQCNILIC 199
            ..|:...:|.|.:|:|||||||.|.:..||::..||..:.|||:||.|...|..:: :..||::.
 Frog   211 KLKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKLANGVNIVVA 275

  Fly   200 TPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQ 264
            ||||||.||...|.|....::.||:|||||.|::||::.:..||...|..|||:|||||||..|:
 Frog   276 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQTMLFSATQTRKVE 340

  Fly   265 DLARLNL-KDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIK 328
            ||||::| |:|:|||..          ..|:|      |..:.|:|.|||...|.:..:|::|:|
 Frog   341 DLARISLKKEPLYVGVD----------DHKET------ATVDGLEQGYVVCPSEKRFLLLFTFLK 389

  Fly   329 NHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDV 393
            .:.|:|::||.:||...||.||:...:  ..|::|::|...|.:|...:..|......::..|||
 Frog   390 KNRKKKMMVFFSSCMSVKYHYELLNYI--DLPVMAIHGKQKQTKRTTTFFQFCNAESGILLCTDV 452

  Fly   394 ASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARN-KTRGECLLVLTPSEEEYMISALKEQLNID 457
            |:||||.|.|:|:||.|.|:|..:||||.||:||. ..||..||:|.| ||...:..|| |..:.
 Frog   453 AARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGRGHALLILRP-EELGFLRYLK-QAKVP 515

  Fly   458 IRCVQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQS 522
            :...:....|:...:.::|..:.:...|..:||.|:.:||::.....:|::|:|.:|:|...|.|
 Frog   516 LSEFEFSWSKISDIQTQLEKLIEKNYYLHKSAQEAYKAYIRAYDSHSHKQIFDVNTLNLPKVAIS 580

  Fly   523 LGLAVTPRVPFLEKFLWRQKQLQQQKEQGDNA----KSINPLLSKLTKQ-QSFGGGD 574
            .|..|.   ||::..:......:.||..|...    ||.|...:|:.|. ...|.||
 Frog   581 FGFQVP---PFVDLNVNSSGGKRLQKRGGGGGFGYQKSNNQHKAKIFKHINKRGRGD 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 176/467 (38%)
DEADc 74..277 CDD:238167 96/204 (47%)
HELICc 311..437 CDD:238034 50/126 (40%)
DUF4217 474..530 CDD:290667 16/55 (29%)
ddx18NP_001016776.1 SrmB 145..634 CDD:223587 192/512 (38%)
DEADc 147..354 CDD:238167 96/207 (46%)
HELICc 368..497 CDD:238034 52/130 (40%)
DUF4217 529..587 CDD:290667 16/60 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D218522at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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