DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and ddx1

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001011133.1 Gene:ddx1 / 496549 XenbaseID:XB-GENE-969096 Length:740 Species:Xenopus tropicalis


Alignment Length:762 Identity:146/762 - (19%)
Similarity:227/762 - (29%) Gaps:348/762 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 FAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLF--- 135
            |::..:..:..:|:.|..::.||.:|.:||...|.|.|||.||.||||||.||.|||::.::   
 Frog     4 FSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL 68

  Fly   136 -------------------MNKW---------------------SR------------------- 141
                               :|||                     ||                   
 Frog    69 KDQQEGKKGKTSVKTGSTVLNKWQMNPYDRGSSFAIGSDGLCCQSREIKEWHGCRSTRGVNKGKY 133

  Fly   142 --------------------------TDGVG---------------------------------- 146
                                      ||..|                                  
 Frog   134 YYEVSCHDQGLCRVGWSTLQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYIDI 198

  Fly   147 ----------------------------------------------------------------- 146
                                                                             
 Frog   199 DNGTVKYSKNGKDLGLAFQIPAHLKNQAVFASCVLKNAELKFNFGEEDFKFPPKDGFVALSKAPD 263

  Fly   147 -------------------------AIIISPTRELAYQIFETLKKVGKHHD---FSAGLIIGGKN 183
                                     |:||.|:||||.|....:|:..|:.|   ....|||||..
 Frog   264 GHVVKSQNTGSAQVSQAKNLPNAPKALIIEPSRELAEQTLNNVKQFKKYVDSPKLRELLIIGGVA 328

  Fly   184 LKFERTRMDQ-CNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFP 247
            .|.:.|.::. .:|::.||||:...:....| |.|.:..|||||||..|..|:...:|.|....|
 Frog   329 AKEQLTLLENGVDIVVGTPGRIDDLISTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRIHGQIP 392

  Fly   248 PVR------QTLLFSAT-QTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPE 305
            .|.      |.::.||| .:..|:.|:...:..|.:|...|..                  :|||
 Frog   393 QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED------------------SVPE 439

  Fly   306 LLQQSYVVLNLEDKITMLWSFI-KNHLKQKII--------------VFVASCKQAKYLYE----- 350
            .:.  :||:.:..|....|..: |||::...:              ::..:.|..|..|.     
 Frog   440 TVH--HVVVPVNPKKDKQWERLGKNHIRTDGVHDKDNTRPGGNSAEMWSEAIKVLKGEYTVRAIK 502

  Fly   351 --------IFCKLRPGSPLLALY-----------------GTLHQDR----RIAIYEDFLRKSHV 386
                    |||:.:.....:..|                 ..||.||    |....|.|.:....
 Frog   503 EHKMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQFSCVCLHSDRKPQERKHNLERFKKCEVR 567

  Fly   387 VMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEE------- 444
            .:..||||:||:|...|.:|:.:..|::...|:||.||..|.:..|..:.::...:|:       
 Frog   568 FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVAAEKEKVWYHVCS 632

  Fly   445 ------------------------YMISALKEQLNIDIRCVQIDPK------------------- 466
                                    .::|.::|.|...|..|:.|.|                   
 Frog   633 SRGKGCHNTRLKEDGGCTIWYNETQLLSEIEEHLTCTISQVEPDIKVPLDEFDGKVVYGQRRATG 697

  Fly   467 -KLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVF 512
             .|:...|.|.|...|  ||.|..:.|..|::...:|  :.:||..|
 Frog   698 GGLYKGHVDILAPTVQ--ELAALEKEAQTSFLHLGYL--SNQLFRTF 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 133/719 (18%)
DEADc 74..277 CDD:238167 81/425 (19%)
HELICc 311..437 CDD:238034 38/174 (22%)
DUF4217 474..530 CDD:290667 12/39 (31%)
ddx1NP_001011133.1 Interaction with dsRNA. /evidence=ECO:0000250|UniProtKB:Q91VR5 1..448 88/464 (19%)
DEAD-like_helicase_N 4..>64 CDD:391939 26/59 (44%)
SPRY_DDX1 93..246 CDD:293933 5/152 (3%)
DEADc_DDX1 264..430 CDD:350696 47/166 (28%)
SrmB 284..>624 CDD:223587 90/360 (25%)
DEAD box. /evidence=ECO:0000255|PROSITE-ProRule:PRU00541 370..373 2/2 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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