DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5800 and ddx56

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001003876.1 Gene:ddx56 / 445399 ZFINID:ZDB-GENE-040825-3 Length:557 Species:Danio rerio


Alignment Length:622 Identity:150/622 - (24%)
Similarity:264/622 - (42%) Gaps:136/622 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 KFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMN 137
            :|.:..|..:..||||:..:..||.:|..:|..||:|||:|..|.||||||.|:.:|:::.:..:
Zfish     7 RFHEMGLDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQRVLTS 71

  Fly   138 KWS-RTDGVGAIIISPTRELAYQIFETLKKVGKH--HDFSAGLIIGGKNLKFER-TRMDQCNILI 198
            |.: |...|.|:::.||:||..|:...::::..:  .|.....|.|..:|..:: ..|::.:|::
Zfish    72 KQTVREQAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKADLSAQKPILMEKPDIVV 136

  Fly   199 CTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTV 263
            .||.|:..|::...|...|::||||:||||.....||:..|.:::.:.|.:.|..|.|||..:.|
Zfish   137 STPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLLCHLPKIYQAFLMSATLNDDV 201

  Fly   264 QDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIK 328
            |.|..|.|.:||.:...|:   :.|.:|.              |||..:....|||..::::.:|
Zfish   202 QALKELVLHNPVTLKLQGS---QLPDSSQ--------------LQQFSIKCEEEDKFLLIYTMLK 249

  Fly   329 NHLKQ-KIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTD 392
            ..|.| |.::||:...:: |..::|.: :...|...|...|....|..|...|.:..:..:.::|
Zfish   250 LGLIQGKTLLFVSDVDRS-YRLKLFLE-QFSIPACVLNSELPVHSRCHIISQFNQGFYNYIIASD 312

  Fly   393 V---------------------------------ASRGLDFPAVNWVVQLDCPEDVSQYIHRAGR 424
            .                                 .|||:||..|:.|:..|.|..|..||||.||
Zfish   313 EQGLESPAGSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTSVESYIHRVGR 377

  Fly   425 SARNKTRGECLLVLTPSEEEYMISALKEQLNIDI-RCVQIDPKKLFSPRV-KIEAFLAQFPE-LR 486
            :||....|..|..::.:|.. |:|.::..|..|. .||    .|.:..|: :||.|..:..: :|
Zfish   378 TARADNPGTALSFISHAELS-MLSEVENALTGDSNNCV----LKPYEFRMEEIEGFRYRCRDGMR 437

  Fly   487 ATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGLAVTPRVPFLEKFLWRQKQLQQQKEQG 551
            :..::|    :|..                                       |.|:::|:....
Zfish   438 SVTKQA----VKEA---------------------------------------RLKEIKQELLNS 459

  Fly   552 DNAKSINPLLSKLTKQQSFGGGDEDEENSDDEDFIKVKRKDHDVEGEPVKLDEEDDTE------- 609
            :..|:.                  .|:|..|   :::.|.|.|:....:|...::..|       
Zfish   460 EKLKTY------------------FEDNPRD---LQLLRHDKDLHPAIIKPHMKNVPEYLIPTAL 503

  Fly   610 NEAEAPLVVPKREKLVTKASLAKKALKKNLQVNSKLK 646
            .....||...::.|.|..:.:...:.|||.:..:.||
Zfish   504 KSLVNPLNQRRKRKKVKSSGVMLSSFKKNYRGRNPLK 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 122/436 (28%)
DEADc 74..277 CDD:238167 70/206 (34%)
HELICc 311..437 CDD:238034 38/159 (24%)
DUF4217 474..530 CDD:290667 6/56 (11%)
ddx56NP_001003876.1 SrmB 8..556 CDD:223587 150/621 (24%)
P-loop_NTPase 8..216 CDD:304359 70/207 (34%)
Helicase_C 238..381 CDD:278689 35/144 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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