DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and pit

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster


Alignment Length:576 Identity:194/576 - (33%)
Similarity:320/576 - (55%) Gaps:54/576 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GRKSGDNSQKRPRQE---INKSRLAATEAEIQD-----------LKTKYAEID--ATAIKKFAQF 77
            |.:..|..:....:|   ..|::|...:::.|:           :::..|.:|  .:..:.||..
  Fly   126 GSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASL 190

  Fly    78 --PLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWS 140
              .:|:.|.:|:.|..|...|::|..|:.|.|:|:|::|||.||||||||||||.:|.:...::.
  Fly   191 KGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFM 255

  Fly   141 RTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQ-CNILICTPGRL 204
            ..:|.|.|||||||||:.|.|..||::..||..:.||::||.|.:.|..::.: .|||:.|||||
  Fly   256 PRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRL 320

  Fly   205 LQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARL 269
            |.|:..:|.|....::.|::||.||.|::||::.|..||...|..|||:|||||||..::.|::|
  Fly   321 LDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEALSKL 385

  Fly   270 NLK-DPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQ 333
            .|| :|:|||             .....:||.:   :.|:|.|:|...|.::.:|::|:|.:.|:
  Fly   386 ALKSEPIYVG-------------VHDNQDTATV---DGLEQGYIVCPSEKRLLVLFTFLKKNRKK 434

  Fly   334 KIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGL 398
            |::||.:||...||.:|:|..:  ..|:.:::|...|.:|...:..|......::..||||:|||
  Fly   435 KVMVFFSSCMSVKYHHELFNYI--DLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 497

  Fly   399 DFPAVNWVVQLDCPEDVSQYIHRAGRSARNK-TRGECLLVLTPSEEEYM--ISALKEQLNIDIRC 460
            |.|.|:|:||.|.|:|..:||||.||:||.. |.|..||::.|.|..::  :.|.|..||.    
  Fly   498 DIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKAAKVPLNE---- 558

  Fly   461 VQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGL 525
            .:...:|:...::::|..:|:...|..:|:.||.||:::....:.|::|||.:|||.|.|:|.|.
  Fly   559 FEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGF 623

  Fly   526 AVTPRVPFLEKFLWRQKQLQQQKEQGDNA----KSINPLLSKLTKQQSFGGGDEDE 577
            .|.|.|   :..:...|:.:.:|..|...    |.:|.  ...:||:.|...:.|:
  Fly   624 LVPPVV---DLKVGAAKRERPEKRVGGGGFGFYKKMNE--GSASKQRHFKQVNRDQ 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 163/464 (35%)
DEADc 74..277 CDD:238167 92/206 (45%)
HELICc 311..437 CDD:238034 48/126 (38%)
DUF4217 474..530 CDD:290667 20/55 (36%)
pitNP_001287459.1 SrmB 186..677 CDD:223587 186/516 (36%)
DEADc 187..394 CDD:238167 92/206 (45%)
HELICc 408..537 CDD:238034 50/130 (38%)
DUF4217 569..627 CDD:290667 20/57 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451450
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D218522at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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