DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and abs

DIOPT Version :10

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_524220.1 Gene:abs / 40530 FlyBaseID:FBgn0015331 Length:619 Species:Drosophila melanogaster


Alignment Length:437 Identity:134/437 - (30%)
Similarity:214/437 - (48%) Gaps:51/437 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KRPR--QEINKSRLAATEAEIQDLKTKYAEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQVQR 100
            |.||  :|:::....|...|::.|..  .|..:..|:.|.:....|.....||.....:||.:|.
  Fly   143 KPPRYIREMSEEEREAVRHELRILVE--GETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQV 205

  Fly   101 DSIGPALQGKDVLGAAITGSGKTLAFLIPV----LEHLFMNKWSRTDGVGAIIISPTRELAYQIF 161
            ..:...|.|:|::|.|.|||||||.|::||    ||..:...:.|.:|...:||.|:||||.|..
  Fly   206 QGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTH 270

  Fly   162 ETLKKVGKH------HDFSAGLIIGGKNLKFERTRMDQ-CNILICTPGRLLQHMDENPLFNTSTM 219
            |.::...||      .:..:.|.:||..:......:.: .:|::.|||||:..:|:..|    |:
  Fly   271 EIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKIL----TL 331

  Fly   220 EM---LVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGG 281
            :|   |.:|||||.:||||::.:.:|...|...|||||||||....:|:.||..|..||.:..|.
  Fly   332 DMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGR 396

  Fly   282 ATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQK----IIVFVASC 342
            |     .:||...|...      |.::|...|:.|.|.:            ||    :::|....
  Fly   397 A-----GAASMNVTQQV------EYVKQEAKVVYLLDCL------------QKTAPPVLIFAEKK 438

  Fly   343 KQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVV 407
            :....::|..  |..|...:|::|...|:.|....:.:......|:.:|||||:|||||.|..|:
  Fly   439 QDVDCIHEYL--LLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVI 501

  Fly   408 QLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQL 454
            ..|.|:|:..|:||.||:.|:.|:|....::..:.|:.::..||..|
  Fly   502 NYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLL 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 SrmB 71..493 CDD:440279 126/402 (31%)
DEADc_DDX10 83..279 CDD:350699 75/209 (36%)
DUF4217 474..530 CDD:464056
absNP_524220.1 DEADc_DDX41 188..393 CDD:350709 75/208 (36%)
SF2_C_DEAD 404..532 CDD:350174 40/147 (27%)
Blue background indicates that the domain is not in the aligned region.

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