DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and Ddx18

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001006997.1 Gene:Ddx18 / 308490 RGDID:1549712 Length:674 Species:Rattus norvegicus


Alignment Length:536 Identity:205/536 - (38%)
Similarity:301/536 - (56%) Gaps:55/536 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RQKPKGPGKPGSRFKPGSGTFKGAG----GGRKSGDNSQKRPRQEINKSRLAATEAEIQDLKTKY 63
            |::|:|.|:     :|     :|||    .|.|..|:|      |:....|..|.| .:|  |.:
  Rat   138 REEPEGAGE-----EP-----EGAGEEPEDGVKEADDS------EVPSLPLGVTGA-FED--TSF 183

  Fly    64 AEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLI 128
            |.:...         :::.|.||:.|..|.|.|::|..||.|.|:|:|:|.||.|||||||||||
  Rat   184 ASLSNL---------VNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLI 239

  Fly   129 PVLEHLFMNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFE-RTRMD 192
            ||:|.:...|:...:|.|.:|:|||||||.|.|..||::..||..:.|||:||.|...| :..::
  Rat   240 PVIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLN 304

  Fly   193 QCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSA 257
            ..||::.||||||.||...|.|....::.||:|||||.||:||::.|..||:..|..|||:||||
  Rat   305 GINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSA 369

  Fly   258 TQTNTVQDLARLNL-KDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKIT 321
            |||..|:||||::| |:|:|||                ..:...:|..:.|:|.|||...|.:..
  Rat   370 TQTRKVEDLARISLKKEPLYVG----------------VDDDKEVATVDGLEQGYVVCPSEKRFL 418

  Fly   322 MLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHV 386
            :|::|:|.:.|:|::||.:||...||.||:...:  ..|:||::|...|::|...:..|......
  Rat   419 LLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYI--DLPVLAIHGKQKQNKRTTTFFQFCNADSG 481

  Fly   387 VMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARN-KTRGECLLVLTPSEEEYMISAL 450
            ::..||||:||||.|.|:|:||.|.|:|..:||||.||:||. ..||..||:|.| ||...:..|
  Rat   482 ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRP-EELGFLRYL 545

  Fly   451 KEQLNIDIRCVQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLD 515
            | |..:.:........|:...:.::|..:.:...|..:||.|:.|||::......|::|||.:|:
  Rat   546 K-QSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLN 609

  Fly   516 LDAFAQSLGLAVTPRV 531
            |...|.|.|..|.|.|
  Rat   610 LPQVALSFGFKVPPFV 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 185/474 (39%)
DEADc 74..277 CDD:238167 100/204 (49%)
HELICc 311..437 CDD:238034 51/126 (40%)
DUF4217 474..530 CDD:290667 18/55 (33%)
Ddx18NP_001006997.1 DEADc 183..390 CDD:238167 101/215 (47%)
DEXDc 198..386 CDD:214692 95/187 (51%)
HELICc 404..533 CDD:238034 53/130 (41%)
DUF4217 565..623 CDD:290667 18/57 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D218522at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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