DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and Ddx56

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:XP_006251499.1 Gene:Ddx56 / 289780 RGDID:1303195 Length:546 Species:Rattus norvegicus


Alignment Length:544 Identity:142/544 - (26%)
Similarity:244/544 - (44%) Gaps:80/544 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 FAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNK 138
            |....|..:..:|:.:..:..||.:|..:|..||:|||:|..|.||||||.|:.||:|:.|...|
  Rat     9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHKK 73

  Fly   139 WS---RTDGVGAIIISPTRELAYQIFETLKKVGKH--HDFSAGLIIGGKNLKFER-TRMDQCNIL 197
            .:   ....|..:::.||:|||.|....::::..:  .|.....:...::...:| ..|::.:::
  Rat    74 ATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSAAEDSASQRAVLMEKPDVV 138

  Fly   198 ICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNT 262
            :.||.|:|.|:.:..|....::|:||:||||.....||:..|.|::.:.|.:.|..|.|||....
  Rat   139 VGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIYQAFLMSATFNED 203

  Fly   263 VQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNL-EDKITMLWSF 326
            ||.|..|.|.:||                |.|...:. |..|:.|||..||... |||..:|::.
  Rat   204 VQTLKELVLHNPV----------------TLKLQESQ-LPGPDQLQQFQVVCETEEDKFLLLYAL 251

  Fly   327 IK-NHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFS 390
            :| :.::.|.::||.:.::. |...:|.: :...|...|.|.|....|..|...|.:..:..:.:
  Rat   252 LKLSLIRGKALLFVNTLERG-YRLRLFLE-QFSIPSCVLNGELPLRSRCHIISQFNQGLYDCVIA 314

  Fly   391 TDV---------------------------ASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARN 428
            ||.                           .:||:||..|:.|:..|.|.....|:|||||:||.
  Rat   315 TDAEILGPQVKAKRQGRGSKGDKASDPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARA 379

  Fly   429 KTRGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDPKKLFSPRVKIEAFLAQFPE-LRATAQRA 492
            ...|..|..:.|:|:. .:..::|.|:.:.:...:.|.:.  ...:||:|..:..: :|:..::|
  Rat   380 NNPGIVLTFVLPTEQS-SLGKIEELLSGEGQAPILLPYQF--QMEEIESFRYRCRDAMRSVTKQA 441

  Fly   493 F----LSYIKSVFLMRNKRLFNVFS---LDLDAFAQSLGL---AVTPR--------VPFLEKFLW 539
            .    |..||.. |:.:::|...|.   .||......|.|   .|.|.        ||...:.|.
  Rat   442 IREARLKEIKEE-LLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPAALRGLV 505

  Fly   540 RQKQLQQQKEQGDNAKSI---NPL 560
            ..::.:::......||.:   |||
  Rat   506 HPRKKRRKMPFSRKAKKVKTQNPL 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 117/431 (27%)
DEADc 74..277 CDD:238167 66/208 (32%)
HELICc 311..437 CDD:238034 39/154 (25%)
DUF4217 474..530 CDD:290667 16/66 (24%)
Ddx56XP_006251499.1 SrmB 9..521 CDD:223587 137/534 (26%)
P-loop_NTPase 9..219 CDD:304359 67/225 (30%)
HELICc 234..388 CDD:238034 39/155 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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