DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5800 and vas

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster


Alignment Length:522 Identity:144/522 - (27%)
Similarity:221/522 - (42%) Gaps:110/522 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GKPGSR-----FKPGSGTFKG-------------------AGGGRKS--------------GDNS 36
            |:.|||     |:.|.|.|:|                   .||.|:.              ||..
  Fly   110 GQGGSRGGQGGFRGGEGGFRGRLYENEDGDERRGRLDREERGGERRGRLDREERGGERGERGDGG 174

  Fly    37 QKRPRQEINKSRLAATEAEIQDLKTK------------YAEIDATAIKKFAQF------------ 77
            ..|.|:  |:..:......::|::.|            ..||.::.|.....|            
  Fly   175 FARRRR--NEDDINNNNNIVEDVERKREFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTG 237

  Fly    78 -----PLSKKTQKALAE--------SKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIP 129
                 |:...|...|.:        |.:..||.:|:.||.....|:|::..|.||||||.|||:|
  Fly   238 SDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLP 302

  Fly   130 VLEHLFMNKWSRTDG-VGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQ 193
            :|..|..:......| ...:|:|||||||.|||...:|.........|::.||.:.:.:...:.:
  Fly   303 ILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR 367

  Fly   194 -CNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIEN--FPPVRQTLLF 255
             |:::|.||||||..:|...:....| ..:|||||||.|||||.:.:..|:.:  ..|..|||:|
  Fly   368 GCHVVIATPGRLLDFVDRTFITFEDT-RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMF 431

  Fly   256 SATQTNTVQDLARLNLKDPVYVG---YGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLE 317
            |||....:|.:|...||:.|:|.   .|||      .:..|:|    :..|.:..::|.::..|.
  Fly   432 SATFPEEIQRMAGEFLKNYVFVAIGIVGGA------CSDVKQT----IYEVNKYAKRSKLIEILS 486

  Fly   318 DKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLR 382
            ::            ....||||.:.:.|.:|.....:..  .|..:::|...|.:|.....||..
  Fly   487 EQ------------ADGTIVFVETKRGADFLASFLSEKE--FPTTSIHGDRLQSQREQALRDFKN 537

  Fly   383 KSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMI 447
            .|..|:.:|.|||||||...:..|:..|.|..:..|:||.||:.|....|.......| |::..|
  Fly   538 GSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDP-EKDRAI 601

  Fly   448 SA 449
            :|
  Fly   602 AA 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 144/522 (28%)
DEADc 74..277 CDD:238167 77/231 (33%)
HELICc 311..437 CDD:238034 33/125 (26%)
DUF4217 474..530 CDD:290667
vasNP_001260458.1 DEADc 247..454 CDD:238167 75/207 (36%)
DEXDc 260..467 CDD:214692 77/213 (36%)
Helicase_C 475..584 CDD:278689 33/122 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451432
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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