DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and rde-12

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001256533.1 Gene:rde-12 / 179855 WormBaseID:WBGene00010280 Length:959 Species:Caenorhabditis elegans


Alignment Length:546 Identity:149/546 - (27%)
Similarity:229/546 - (41%) Gaps:133/546 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GKPGSRFKPGS---GTFKGAGGGRKSGDNSQKR-PR------QEINK------SRLAATEAEIQD 58
            |.|.:.::..|   |.|..:.|....|.|:..| ||      ::|::      .|||..:.. ||
 Worm   302 GNPNNSYRGNSNNIGGFHRSDGSNSEGVNAPVRAPRDWVPVTRDIDELVRETADRLADCDVG-QD 365

  Fly    59 --LKTKYAEIDA--TAIKKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITG 119
              ::.:.||.|.  |:.......|...:|.|.:   |:.:...:|...|...|.|.||||.|.|.
 Worm   366 RAVEIRNAEKDVRLTSWTNSGLHPTILETLKRI---KYNNVRTIQGAMIPQVLDGHDVLGQAETS 427

  Fly   120 SGKTLAFLIPVLEHLF------MNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLI 178
            :|||.||.:|:::.:.      .||..:.||..|:|::||||||.||.|.|:...::.|....|.
 Worm   428 AGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIVLLS 492

  Fly   179 IGGKNLKFERTR-----MDQCNILICTPGRLLQHMDENPLFNTSTMEM--LVLDEADRCL----- 231
            .|    :.:|.|     .:.|:|||.|.||:   ||.....:.|.:.:  ||.|||||.|     
 Worm   493 YG----QSDRARSLNEIRNGCDILIGTCGRI---MDFTVKSHISLLHLRFLVFDEADRLLQDMKK 550

  Fly   232 -----------DMGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPR 285
                       |.||.::        ...|||::.|||...:|..:|...:|         ..|.
 Worm   551 DPLGHLGAIIKDAGFMES--------AATRQTIMTSATFNASVMTVANELMK---------RLPG 598

  Fly   286 EEPSASTKKTPNTAVLAVPELLQQSYVVLNLE--------DKITMLWSFIKNHLK---QKIIVFV 339
            ::....       .|||...|.::    :|||        :|...|...:|.::.   .|.|:||
 Worm   599 QDEMIK-------IVLANGRLSKR----VNLEFFECKGLAEKNAKLREILKQNVNGKTLKTIIFV 652

  Fly   340 ASCKQAKYLYEIFCKLRPGSPLL-ALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAV 403
            ....|..   ....||..|..|. .|:|...||.|..:..||......::.:||:.|||:|...:
 Worm   653 QKKDQCD---ACAAKLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDL 714

  Fly   404 NWVVQLDCPE-DVSQ----YIHRAGRSAR--NKTRGECLLVLTPSEEEYMISALKEQLNIDIRCV 461
            :.|:..|.|: |..|    :||||||:.|  .|..|.|:..:.|                     
 Worm   715 DRVINFDLPDGDPDQGADTFIHRAGRTGRTGRKENGLCVSFVDP--------------------- 758

  Fly   462 QIDPKKLFSPRVKIEAFLAQ-FPELR 486
            |.|...|.:|:: :|..::| .|:|:
 Worm   759 QSDRDSLLAPKL-VELIISQNLPDLK 783

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 144/528 (27%)
DEADc 74..277 CDD:238167 71/231 (31%)
HELICc 311..437 CDD:238034 43/144 (30%)
DUF4217 474..530 CDD:290667 4/14 (29%)
rde-12NP_001256533.1 PTZ00110 230..799 CDD:240273 149/546 (27%)
P-loop_NTPase 382..594 CDD:304359 70/229 (31%)
HELICc 628..755 CDD:238034 40/129 (31%)
Nucleoporin_FG <867..950 CDD:290362
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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