DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and Y55F3BR.1

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_500004.2 Gene:Y55F3BR.1 / 176913 WormBaseID:WBGene00021938 Length:728 Species:Caenorhabditis elegans


Alignment Length:632 Identity:134/632 - (21%)
Similarity:231/632 - (36%) Gaps:179/632 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GPGKPGSRFKPGSGTFKGAGGGRKSGDNSQKRPRQEINKSRLAATEAEIQDLKTKYAEIDATAI- 71
            |..|.|:.|:    :|...|.|:||..          .|.....|.....|:...:.::|...| 
 Worm   151 GSLKIGTDFE----SFGYGGTGKKSFG----------KKFDDYGTSFTTNDVLGCFLDLDELKIW 201

  Fly    72 --KKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDV-LGAAITGSGKTLAFLIP---- 129
              |...|||::.:..|     ||    :.....:.||:..::. ||....||.   ||..|    
 Worm   202 WSKNGVQFPVAYQIDK-----KF----KTAATCLYPAILCQNSGLGVNFGGSA---AFKYPPGTQ 254

  Fly   130 -----VLEHLFMNKWSRTDGVG-------AIIISPTRELAYQIFETLKKVGKHHD---FSAGLII 179
                 ..|...:..||..:.:.       .:|:.|||||..|.|:.::......|   .....:.
 Worm   255 YVAVAQAEDGNLKWWSAAEQLSIDSSTPLCVILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLA 319

  Fly   180 GGKNL-KFERTRMDQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCL----DMGFQKTL 239
            .|:|: :..||....|:|::.||.|:...:....| .|..::.:|:||.|:.|    :...|  :
 Worm   320 AGENMNQILRTLETGCDIVVGTPSRVFDLIHTGKL-ATKNLQFVVIDEIDQFLAGKNNCAHQ--I 381

  Fly   240 NSIIENFPPV------RQTLLFSATQTN-TVQDLARLNLKDPVYVGYGGATPRE--------EPS 289
            .||....|.|      ||.:..|||..| .|...|..::..|.::...||....        ...
 Worm   382 ESIFRVLPLVAQDGTRRQVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVD 446

  Fly   290 ASTKKTPNTAVLAVPELLQQSYVVLNLE-----------------DKITMLWSFIKN-------H 330
            ||..|          :.::|.:..::||                 |.|::....:|.       |
 Worm   447 ASEDK----------QWIRQMHQQVHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIH 501

  Fly   331 LKQ--KIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMF--ST 391
            ..|  |.|||..:.:|..:: |.|.: :.......|:|....:.|.:..|.|  |..::.|  .:
 Worm   502 ALQMDKAIVFCRTKQQCDHM-EHFLQ-QNNLSAACLHGDRSAEERQSSLEGF--KKGIIRFLVCS 562

  Fly   392 DVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNK--------------------------- 429
            ||.:||||...|.:|:.:..|::.|.|:||.||..|.:                           
 Worm   563 DVVARGLDVQGVPFVISVTLPDEKSMYVHRIGRVGRAERMGLSISLVSEYEEKAWYHKCRSRGVN 627

  Fly   430 -------TRGECLLVLTPSEEEYMISALKEQLNIDIRCV---------QIDPKKLFSPR------ 472
                   ::|.|.:.|   :|:.|:..::|.|...|..|         :.|.|.::..|      
 Worm   628 CTNTKDISKGGCTIWL---QEKKMLGEIEEHLGATISTVDSDFNVPVDEFDGKVVYGERRTGGAN 689

  Fly   473 -----VKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSL 514
                 :::.:..:|..:|....|..:|:        .|:.:|.:.|:
 Worm   690 FDTHVLQLASSASQLADLETKMQLEYLN--------NNRHVFEIHSM 728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 126/576 (22%)
DEADc 74..277 CDD:238167 57/234 (24%)
HELICc 311..437 CDD:238034 39/187 (21%)
DUF4217 474..530 CDD:290667 7/41 (17%)
Y55F3BR.1NP_500004.2 P-loop_NTPase 4..>69 CDD:304359
SPRY_DDX1 89..244 CDD:293933 25/115 (22%)
SrmB 278..>614 CDD:223587 82/352 (23%)
P-loop_NTPase <282..420 CDD:304359 38/140 (27%)
Helicase_C 492..599 CDD:278689 32/110 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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