DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and F55F8.2

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_491652.1 Gene:F55F8.2 / 172223 WormBaseID:WBGene00018890 Length:746 Species:Caenorhabditis elegans


Alignment Length:748 Identity:184/748 - (24%)
Similarity:309/748 - (41%) Gaps:198/748 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QKPKGPGKPGSRFKPGSGTFKGAGGGRKSGDNSQ----KRPRQEINKSRLAATEAEIQDLKTKYA 64
            :|||...|                  ||.|:|..    |:.::|.:|             ||   
 Worm   121 EKPKEQKK------------------RKGGENGDTGKPKKSKKEASK-------------KT--- 151

  Fly    65 EIDATAIKKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGK-DVLGAAITGSGKTLAFLI 128
              |.:|.|:|  :.|..:..:|:.:..|..||::|...:..|::.: ||||||.|||||||||.|
 Worm   152 --DISAWKQF--YFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGI 212

  Fly   129 PVLEHLFMN-------KWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGG-KNLK 185
            |::..|..:       :.:...|..|:|::|||||..||.:.:..:.......|..|:|| ..:|
 Worm   213 PLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVK 277

  Fly   186 FERTRMDQ-CNILICTPGRLLQHMDENP----LFNTSTMEMLVLDEADRCLDMGFQKTLNSII-- 243
            .||....| .:|::.|||||...|.|..    |.....::.||:||.||.::.|:...|..|:  
 Worm   278 QERIISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNK 342

  Fly   244 ---ENFPPVRQTLLFSATQT-NTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPN----TAV 300
               |:.....|||:||||.| ...||:|                  ||.....|:..:    ..:
 Worm   343 IHEESEKEKLQTLVFSATLTFAKAQDVA------------------EEEKKKAKELSSQQKIQRL 389

  Fly   301 LAVPELLQQSYVVL--------------------NLEDKITMLWSFIKNHLKQKIIVFVASCKQA 345
            :.:..|.:..:.|:                    ||.:|.|.| .::......:.||||.|...|
 Worm   390 IKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSL-VYLLTRYPGRTIVFVNSIDAA 453

  Fly   346 KYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLD 410
            :.||.:...:.. .|:: |:..:.|.:|:...|.|....:.|:.:||||:||||...::.|:...
 Worm   454 RRLYSVLKSVNI-DPMI-LHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQ 516

  Fly   411 CPEDVSQYIHRAGRSARNKTRG-ECLLVLTPSEEEYM--ISALKEQLNIDIRCVQIDP-----KK 467
            .|:.|..||||:||:||...|| ..:||..||.:.||  ...|....::::..:..:|     ||
 Worm   517 VPKKVEIYIHRSGRTARASHRGLTVVLVDPPSRQFYMKLCKGLNRMQDLNVFPIDFEPLMNAIKK 581

  Fly   468 LFSPRVKIEAFLAQFPELRAT-------AQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQSLGL 525
            ......:|::...:..:::.:       |:.|.|.|.::     ..|..:..:|::|...|    
 Worm   582 RVRLASEIDSLGFRCKKIKMSESWFEKAARAADLDYDET-----RHREMDGLNLEVDTMVQ---- 637

  Fly   526 AVTPRVPFLEKFLWRQKQLQQQ----------KEQGDNA---KSINPLLSKLTKQQSFGGGDEDE 577
                          :.:|||.|          :..|.::   |.|.|.:  :.:.:|.|....|.
 Worm   638 --------------KSRQLQAQLRTELSLPLPRVDGSDSMKTKYITPEI--VARLRSVGDNAIDV 686

  Fly   578 ENSDDEDFIKVKRKDHDVEGEPVKLDEEDDTENEAEAPLVVPKREKLVTKASLAKKALKKNLQVN 642
            .|...::..:.|||..       |...||:                        ..::||:|:.:
 Worm   687 LNQKIDETKEWKRKSR-------KATREDE------------------------MNSMKKSLKSS 720

  Fly   643 SKLKFDDEGETMADDRSQMKALSARQRTVNQDD 675
            .|.|     |.:|:.:.:.||  |:...:::.|
 Worm   721 QKNK-----ERLAEKKKKEKA--AKVTKLSETD 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 146/522 (28%)
DEADc 74..277 CDD:238167 74/222 (33%)
HELICc 311..437 CDD:238034 42/146 (29%)
DUF4217 474..530 CDD:290667 9/62 (15%)
F55F8.2NP_491652.1 DUF3381 <40..106 CDD:288694
SrmB 160..618 CDD:223587 133/478 (28%)
P-loop_NTPase 162..362 CDD:304359 69/199 (35%)
Helicase_C 427..534 CDD:278689 36/109 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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