DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5800 and ddx-10

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_490989.1 Gene:ddx-10 / 171810 WormBaseID:WBGene00021277 Length:732 Species:Caenorhabditis elegans


Alignment Length:788 Identity:320/788 - (40%)
Similarity:463/788 - (58%) Gaps:106/788 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KGAGGGRKSGDNSQKR---------PRQEINKSRL---------AATEAEIQDLKTKYAEI---D 67
            ||.|..:.:|:|.:||         .|:.:.:.||         ...|..:.:::.||.|:   .
 Worm     7 KGGGAQKWAGNNKRKRNFDGEQDPSVRKALKEKRLLKKRKQDLKGQEETMLDEVEQKYQEMLKKS 71

  Fly    68 ATAIKKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLE 132
            :....:|..||||.:|.:.|.::.:..||::|||:|..:|.|.||:|||.||||||||.:|||||
 Worm    72 SRTFLRFEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLE 136

  Fly   133 HLFMNKWSRTDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQCNIL 197
            .|:..|||...|:||:|||||||||.|.|.|:..||.||.||.||:|||.::.|||.|:...||:
 Worm   137 ALWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRISGINII 201

  Fly   198 ICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTNT 262
            :|||||||||||||...:..::::||||||||.|||||.|.|||||.|.|..|||||||||||..
 Worm   202 VCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTRN 266

  Fly   263 VQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFI 327
            |:||.|:...|||:|     :..|..||:|           |:.|:||||::..|.||..|||||
 Worm   267 VKDLCRVCTNDPVFV-----SVHENASAAT-----------PDNLKQSYVIVEEEHKINALWSFI 315

  Fly   328 KNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTD 392
            :.|.|:|.:|||:|||||::|.|.|.:||||.|::.|:||::|.:||..:..|......|:.:||
 Worm   316 EAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATD 380

  Fly   393 VASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQLNID 457
            ||||||||..::||:|:|||..:..||||.|||||....|..||:::||:||.||..| |:.:|.
 Worm   381 VASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKL-EKHSIP 444

  Fly   458 IRCVQIDPKKLFSPRVKIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVFSLDLDAFAQS 522
            |..::|.|..:...|||:.|.||:..||:..||::.::|::|::.|::|::|:|.::|..|.|.|
 Worm   445 IEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKKVFDVEAIDAAALADS 509

  Fly   523 LGLAVTPRVPFLEKFLWRQKQLQQQKEQGDNAKSINPLLSKLTKQQSFGGGDEDEENS------- 580
            .||...|||.||.|         :.|:.|:.      |:.|..|       :|:||.|       
 Worm   510 FGLVSVPRVRFLNK---------KAKKSGEK------LMEKEVK-------EEEEEASLVGKFAI 552

  Fly   581 --DDEDFIKVKRKDHDVEGEPVKLDEEDDTENEAEAPLVVPK-REKLVTKASLAKKALKKNLQVN 642
              ||||...||:.    .|||.::.||:..|..:...:...| .:|.|||.|.|||.|.|.|:||
 Worm   553 DEDDEDIFTVKKP----TGEPEQIKEEEAAEKISNITISKTKPLKKAVTKVSAAKKILNKKLKVN 613

  Fly   643 SKLKF---DDEGETMADDRSQMKALSARQRTVNQDDDDGGINLVLSKALLTEEDQYDKQRFRELV 704
            :|..|   |||.|.:.:..|.:.:.              |:::..::..:...|:.|::||:.| 
 Worm   614 TKKTFGAEDDELEELEEGPSTITSY--------------GLDIEKARQEIKSGDKEDRKRFKLL- 663

  Fly   705 KKRHKLQREKLRKKAEEAKGSDDEEEQQDDDNADDAGSESDHSVDLSWLPDPDKV---YKNKPNA 766
              |.:.::|||.||...|:  ::|..:.|:|.::|       ..|:|||||||.|   |:.:|:.
 Worm   664 --REQRRQEKLAKKNRRAE--EEEAVEYDEDGSED-------EPDISWLPDPDAVRRKYEEEPDE 717

  Fly   767 SDRNESKS 774
            .:..|.::
 Worm   718 VEDLEQQA 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 221/467 (47%)
DEADc 74..277 CDD:238167 121/202 (60%)
HELICc 311..437 CDD:238034 64/125 (51%)
DUF4217 474..530 CDD:290667 20/55 (36%)
ddx-10NP_490989.1 SrmB 52..511 CDD:223587 231/475 (49%)
DEADc 78..282 CDD:238167 122/208 (59%)
Helicase_C 305..416 CDD:278689 59/110 (54%)
DUF4217 461..517 CDD:290667 20/55 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158514
Domainoid 1 1.000 219 1.000 Domainoid score I1520
eggNOG 1 0.900 - - E2759_KOG0343
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20922
Inparanoid 1 1.050 526 1.000 Inparanoid score I670
Isobase 1 0.950 - 0 Normalized mean entropy S1985
OMA 1 1.010 - - QHG46503
OrthoDB 1 1.010 - - D218522at33208
OrthoFinder 1 1.000 - - FOG0005116
OrthoInspector 1 1.000 - - oto17915
orthoMCL 1 0.900 - - OOG6_102138
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R291
SonicParanoid 1 1.000 - - X3635
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1817.750

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