DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and Ddx1

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_598801.1 Gene:Ddx1 / 104721 MGIID:2144727 Length:740 Species:Mus musculus


Alignment Length:760 Identity:146/760 - (19%)
Similarity:228/760 - (30%) Gaps:344/760 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 FAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLF--- 135
            |::..:..:..:|:.|..::.||.:|.:||...|.|.|||.||.||||||.||.|||::.::   
Mouse     4 FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETL 68

  Fly   136 -------------------MNKW---------------------SR------------------- 141
                               :|||                     ||                   
Mouse    69 KDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRGTRGLLKGKH 133

  Fly   142 --------------------------TDGVG---------------------------------- 146
                                      ||..|                                  
Mouse   134 YYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI 198

  Fly   147 ----------------------------------------------------------------- 146
                                                                             
Mouse   199 DKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPD 263

  Fly   147 -------------------------AIIISPTRELAYQIFETLKKVGKHHD---FSAGLIIGGKN 183
                                     |:|:.|:||||.|....:|:..|:.|   ....|||||..
Mouse   264 NYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVA 328

  Fly   184 LKFERTRMDQ-CNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFP 247
            .:.:.:.:|. .:|::.|||||...:....| |.|.:..|||||||..|..|:...:|.:....|
Mouse   329 ARDQLSVLDNGVDIVVGTPGRLDDLVSTGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP 392

  Fly   248 PVR------QTLLFSAT-QTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPE 305
            .:.      |.::.||| .:..|:.|:...:..|.:|...|..                  :||:
Mouse   393 QITCDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGED------------------SVPD 439

  Fly   306 LLQQSYVVLNLEDKITMLWSFI-KNHLKQ-----------------------KII---VFVASCK 343
            .:.  :||:.:..|...||..: |||::.                       ||:   ..|.:.|
Mouse   440 TVH--HVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK 502

  Fly   344 QAKYLYE-IFCKLR-------------PGSP--------LLALYGTLHQDRRIAIYEDFLRKSHV 386
            :.|.... |||:.:             .|.|        .:.|:|......|....|.|.:....
Mouse   503 EHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR 567

  Fly   387 VMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECL-LVLTPSE-------- 442
            .:..||||:||:|...|.:|:.:..|::...|:||.||..|.:..|..: ||.|..|        
Mouse   568 FLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCS 632

  Fly   443 ----------------------EEYMISALKEQLNIDIRCVQID---PKKLFSPRV--------- 473
                                  |..::|.::|.||..|..|:.|   |...|..:|         
Mouse   633 NRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAG 697

  Fly   474 ------KIEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVF 512
                  .::.......||.|..:.|..|::...:|  ..:||..|
Mouse   698 GGNYKGHVDVLAPTVQELAALEKEAQTSFLHLGYL--PNQLFRTF 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 136/702 (19%)
DEADc 74..277 CDD:238167 78/425 (18%)
HELICc 311..437 CDD:238034 40/175 (23%)
DUF4217 474..530 CDD:290667 9/39 (23%)
Ddx1NP_598801.1 Necessary for interaction with RELA. /evidence=ECO:0000250|UniProtKB:Q92499 1..525 98/541 (18%)
Interaction with dsRNA. /evidence=ECO:0000269|PubMed:21703541 1..448 84/464 (18%)
Necessary for interaction with HNRNPK. /evidence=ECO:0000250|UniProtKB:Q92499 1..295 36/290 (12%)
P-loop_NTPase 4..>72 CDD:304359 26/67 (39%)
SPRY_DDX1 93..245 CDD:293933 5/151 (3%)
SrmB 284..>624 CDD:223587 91/360 (25%)
P-loop_NTPase <284..426 CDD:304359 43/142 (30%)
DEAD box. /evidence=ECO:0000255|PROSITE-ProRule:PRU00541 370..373 2/2 (100%)
Helicase_C 493..609 CDD:278689 28/115 (24%)
Necessary for interaction with HNRNPK. /evidence=ECO:0000250|UniProtKB:Q92499 525..740 47/216 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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