DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and Ddx55

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001258255.1 Gene:Ddx55 / 100362764 RGDID:2324094 Length:600 Species:Rattus norvegicus


Alignment Length:683 Identity:204/683 - (29%)
Similarity:323/683 - (47%) Gaps:124/683 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 QFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWS 140
            |.||......||.|..|:|.|.||..:|...::.|||...|:|||||||||:||:||.|...:..
  Rat    13 QVPLHPLVLGALRELGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEK 77

  Fly   141 -RTDGVGAIIISPTRELAYQIFETLKKVGKHH-DFSAGLIIGGKN--LKFERTRMDQCNILICTP 201
             :.:.||||:|:||||||.||.|.|....||. .||..|.|||:|  ...||.:....||::.||
  Rat    78 LKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATP 142

  Fly   202 GRLLQHMDENPLFN-----------TSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLF 255
            |||      ..:|.           ..::::||||||||.|||||:.::|:|:|..|..|:|.||
  Rat   143 GRL------EDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLF 201

  Fly   256 SATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKI 320
            |||||..|::|.|..|::||.:   ....:...::||:|||:.        |:..|::...::|.
  Rat   202 SATQTQEVENLVRAGLRNPVRI---SVKEKGVAASSTQKTPSR--------LENHYMICKADEKF 255

  Fly   321 TMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSH 385
            ..|..|:::..::|.:||.::|...:|..:....|.....:|.::|.: :.:|..|:.:|.:...
  Rat   256 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALVQRVKILCIHGKM-KYKRNKIFMEFRKLQS 319

  Fly   386 VVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYM-ISA 449
            .::..|||.:||:|.|.||||:|.|.|.:.|.::||.||:||....|..|:.|.|.||.|: ..|
  Rat   320 GILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEEAYINFLA 384

  Fly   450 LKEQLNIDIRCVQIDPKKLFSPRVKIEAFLAQFPELRATA----------QRAFLSYIKSVFLMR 504
            :.::..:....:|.:...|             .|:|||.|          .:||:|::::.....
  Rat   385 INQKCPLQEMSLQRNTVDL-------------LPKLRAMALADRAVFEKGMKAFVSFVQAYAKHE 436

  Fly   505 NKRLFNVFSLDLDAFAQSLGLAVTPRVPFLEKFLWRQKQLQQQKEQGDNAKSINPLLSKLTKQQS 569
            ...:|.:..||....|:...|...||:|.|               :|.......|:         
  Rat   437 CSLIFRLKDLDFAGLARGFALLRMPRMPEL---------------KGKQFPDFVPV--------- 477

  Fly   570 FGGGDEDEENSDDEDFIKVKRKDHDVEGEPVKLDEEDDTENEAEAPLVVPKREKLVTKASLAKKA 634
                |.|.:....:|.|:.|::...:|.:     .::.||||.        |.|.:...:.:|:.
  Rat   478 ----DIDTDTIPFKDKIREKQRQKLLEQK-----RKERTENEG--------RRKFIKNKAWSKQK 525

  Fly   635 LKK--NLQVNSKLKFDDEGETMADDRSQMKALSARQRTVNQDDDDGGINLVLSKALLTEEDQYDK 697
            .||  ..::|:|.| .|||..:.|:  .|:.|....|.:.:          ..|..:||| :::|
  Rat   526 AKKERKKKMNAKRK-KDEGSDIDDE--DMEELLNDTRLLKK----------FKKGKITEE-EFEK 576

  Fly   698 QRFRELVKKRHKLQREKLRKKAEEAKGSDDEEE 730
                      ..|...|...:..|:..||.||:
  Rat   577 ----------GLLTSTKRTVRLTESGVSDSEED 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 148/410 (36%)
DEADc 74..277 CDD:238167 96/215 (45%)
HELICc 311..437 CDD:238034 38/125 (30%)
DUF4217 474..530 CDD:290667 13/65 (20%)
Ddx55NP_001258255.1 DEADc 9..224 CDD:238167 96/219 (44%)
DEXDc 24..228 CDD:214692 92/212 (43%)
Helicase_C 252..363 CDD:278689 35/111 (32%)
DUF4217 403..462 CDD:290667 14/71 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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